Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025681.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq9745 376 4e-101 >seq9745 Length=7305 Score = 376 bits (416), Expect = 4e-101 Identities = 615/896 (69%), Gaps = 17/896 (2%) Strand=Plus/Minus Query 1703 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1762 |||||||||||| |||||||| ||||| || || ||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1763 TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA 1822 | | | || ||||| || | | ||||||||||||||| ||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1823 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACTTTGGGACT 1882 | || | |||| |||||||||||| ||||| ||| ||| | ||| ||| || || Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1883 CAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAACGACCGAGCCCATACTGTTTT 1942 | || || || || || ||||| || || ||||| || | |||||||| |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1943 TCCTATTCTACTTGGGCCTTCTATAACAATACTAATGGGCCTATCCGGCCGCGCAGCGGA 2002 || ||||| ||||||| ||| ||||| || || | | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 2003 ATCCATGACATTCTCAGCAGCCCAGTCGCTGATAATGTCAGGTACATTATTGAAAGNNNN 2062 | || || || || || ||||||| | ||| || ||||| || || || | Sbjct 6474 ACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACT 6415 Query 2063 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTATCTAAATTTGA 2122 || |||| ||||| | Sbjct 6414 GGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGC 6355 Query 2123 AACTAAATTATGATATTG-AAATATAAATTTTTCAGGAAGTTTTTCCCTGATTATTTGTA 2181 | ||| ||||| | | ||||| ||| ||| || |||||||||| ||||| | || Sbjct 6354 ATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC-GTTTTTCCCTAATTATCTCTA 6296 Query 2182 ACGCAGCTTCTTTATTGCCTGCATTTAGGGCCTCTGCTGCTGCGTCATTAGCAGTCTGCT 2241 | || ||| |||| || | ||||||||| ||||| | |||||||| | || | Sbjct 6295 AGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTT 6236 Query 2242 GGCCTCCTCTAG------CAGATCTGCCGTCGACCTGGAATTCTCCCCATTCCAAAGTGT 2295 | || ||||| | ||||||| || || | ||||||||||||||| || | || | Sbjct 6235 GACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTAT 6176 Query 2296 CTCCATCCTTATCGACGTAGGACTTGACGTCGGAGCTGGATTTCGCTCTCTGAATGTTTG 2355 |||| | ||| |||| || ||||| |||| |||||||||||| ||| ||| ||||||| Sbjct 6175 CTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTG 6116 Query 2356 GGTGGAAATGTGCTGACCGGGTTGGAGAGACCAAGTCGAAGAATCTTTGATTCGTGCACT 2415 | |||||||||| ||||| |||||||||||| | ||||||||||| | ||||||||| Sbjct 6115 GATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATG 6056 Query 2416 GGTAATTCCCCTCGAACTGGAGAAGCACATGGAGATGAGGTTGCCCATCTTCATGCAGTT 2475 ||| ||||| ||||| |||| |||||| |||||| |||||| || | |||||| || Sbjct 6055 TGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTT 5996 Query 2476 CTCTGCATATCTTAATATATTTTTTATTTGTAGGGG---TTTGGAGTTGAAGAAGCTGCT 2532 ||||||| ||||| || ||||| || ||| |||| || || ||||| || | Sbjct 5995 CTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAA----TT 5940 Query 2533 GA-AGAGTTTCTTCTTTGGATAGAGAACATTGGGGATAAGTGAG-AAAATAGTTTT 2586 || |||| ||| ||||| | ||||| || |||||||| || || |||||| |||| Sbjct 5939 GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8711743290480