Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025725.1 Length=2735 Score E Sequences producing significant alignments: (Bits) Value seq9745 439 4e-120 >seq9745 Length=7305 Score = 439 bits (486), Expect = 4e-120 Identities = 689/981 (70%), Gaps = 34/981 (3%) Strand=Plus/Minus Query 1611 GCATTTCTGATTGCCCAAGCCTTCAATGCCGTATTCTTCGGCTCGTCAAGGAACTCTTTA 1670 |||||| ||| ||||| | ||| | || | ||||| |||||||| ||||||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1671 TAGCTGGAATTGGGCCCAGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGA 1730 || || || ||||| || |||||||| |||||||| ||||| ||||| ||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1731 ACCGGCTTTCCGTATTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTG 1790 | |||||||||||| | | || ||||| || || | |||||||||||| ||||| Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1791 AAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTGTACCACGCGTCGTTGCTG 1850 || || |||| || | ||||| |||| |||||||||||||||||| || || ||| || Sbjct 6668 AAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTG 6609 Query 1851 TAGACCCTAGGACTCAAGTCCAGATGGCCACATAGGTAGTTATGTGGACCCAATGACCTA 1910 || | || || | || ||| || |||| ||| || ||||| || ||||| ||| Sbjct 6608 TACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTA 6549 Query 1911 GCCCACATCGTCTTCCCCGTCCGACTATCGCCCTCTATGACTATACTATTAGGTCTGAAA 1970 ||||| || || ||||| || | | || || |||| |||||||| |||||| | | Sbjct 6548 GCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGA 6489 Query 1971 GGCCGCGCAGCTGCATCCATGACATTCTCAGACACCCACTGTTCAAGTTCATCTGGAACT 2030 |||| | ||| ||| || || || || ||||| | || ||| || || || Sbjct 6488 GGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACG 6429 Query 2031 TGGTCAAATGAAGACTGAGGA--AAGGGAGAAACGTACACCTCGGCGGGAGGTGTAAAAA 2088 | || ||||| | ||| | || |||||||| || | | | |||| || | Sbjct 6428 TTGTTAAATGTA--CTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATA 6371 Query 2089 TCTTGTCCAGATTTGAGCTGATGTTATGGAAGTCCCTGAC--ATAATCCCTAGGTGCTAA 2146 || | |||| ||| | | | |||| || | | | |||||| | || | Sbjct 6370 TCATATCCAAATTAGCATTTAATCTATGAAAA--CGTAAATAATAATCTTTTGGGCGTTT 6313 Query 2147 TTCCCTAAGGATC-CTAAGAGCCTCTGACTTACTTCCGCTGTTAATTGCTGCGGCGTAAG 2205 |||||||| ||| ||||| || ||| ||| || || | ||| | |||||| Sbjct 6312 TTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAA 6254 Query 2206 CGTCGTTTGCAGTCTGTTGAcccccccGTG------CAGATCGTCCGTCGATCTGGAATG 2259 | || || || | ||||||||||| | || |||||| ||| || ||||||||| Sbjct 6253 CATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATT 6194 Query 2260 TGCCCCATTCAAGGGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATT 2319 ||||| |||| |||||||||| ||| ||||| || ||||| |||| ||||||||||| Sbjct 6193 CTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATT 6134 Query 2320 TAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGA 2379 || ||||||||||||| ||||||||||||| |||||||||||| || || || ||||||| Sbjct 6133 TACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGA 6074 Query 2380 ATCTCTGATTCTGGCATTTGTATTTTCCGTGGAATTGGATGAGCACATGCAGATGAGGCT 2439 |||| | |||| |||| |||| || || | ||||||||| ||||| || ||| |||| | Sbjct 6073 ATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTT 6014 Query 2440 CCCCATTCTCGTGTATCTCTCGGCAGATTTTGATGAATTT---------AGGGCTAGTGG 2490 ||| || || || |||| ||| || |||||| |||| ||| || | Sbjct 6013 CCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTA 5954 Query 2491 GCGTTTGAAGCCCCCTAATTTGGGAAAGAGCCTCTTCTTTAGTGAGAGAGCACCGAGGAT 2550 | |||||| ||||| || ||||| || ||||| || |||||||| | |||| Sbjct 5953 GGTTTTGAA------TAATT---GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGAT 5903 Query 2551 ATGTGAGGAAATAATTTTTAG 2571 |||| || ||| |||||||| Sbjct 5902 ATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8562743314260