Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025964.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq9745 437 1e-119 >seq9745 Length=7305 Score = 437 bits (484), Expect = 1e-119 Identities = 555/760 (73%), Gaps = 14/760 (2%) Strand=Plus/Minus Query 1611 GAAGGTTGCATTTTTTAGTGCCCAGGCTTTCAATGCGCTATTCTTCTCCTCGTCCAGGTA 1670 |||| ||||||| | || ||||||| || | || ||||| || ||||| || | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1671 CTCCTTATAGCTGGAATTGGGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTT 1730 ||| ||||| || || ||||| || |||||||| |||||||| ||||| || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1731 AATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAA 1790 || || || ||||| ||||| || |||| | ||||| || |||| |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1791 CTCTTTAAAGTGCTTTAGGTAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGCCTC 1850 || ||||| || |||| || | |||||||||| ||||||||||||||||||||| || Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1851 ATTATTGTAGACCTTTGGGCTAAGGTCTAGATGCCCACACAGATAATTATGTGGTCCAAG 1910 ||| ||||| |||||||| | || ||| || || | ||||| ||||| || | Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1911 TGATCTGGCCCACATCGTCTTTCCCGTTCTACTGTCACCCTCTATGACTATACTTATGGG 1970 |||||| ||||| || || || || |||||| ||||| |||| |||||||| || || Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1971 TCTCAAAGGCCGCGCAGCGGCACTGACAACATTCTCGGCAGCCCACTCCTCAAG-TTCTT 2029 || ||||| | ||| |||||| ||||| || || || |||| || | ||| ||| Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2030 CGGGAACTTGATCAAAGGAAGAAGACGAAAAAGGAGAAACATAAACCTCTACAGGAGGTG 2089 ||| | ||| | ||| | | || ||||||||||||||| | | |||| || | Sbjct 6435 CGGTACGTTG-TTAAATGTACTGGATACAAAAGGAGAAACATATA---TTGCAGGTGGAG 6380 Query 2090 ---TAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAG 2146 || ||| |||| |||||| ||||| ||||| | | ||| | ||||||| | Sbjct 6379 CCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTG 6320 Query 2147 GGAGTTTTTCCCTAATTATTGCTAAAGCTGCGTCAGCAGAACCGGCATTTAACGCCTCTG 2206 || |||||||||||||||| |||| ||||| ||| || | ||||| || |||| Sbjct 6319 GGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTG 6260 Query 2207 CTGCAACATCATTAGCTGTCTGTTGACCTCCTC------GAGCAGATCTTCCATCGATCT 2260 | |||||||||||| | |||||||| |||| |||||||||||||| |||| Sbjct 6259 CGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCT 6200 Query 2261 GAAACTCACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGC 2320 | || || ||||| || || ||| |||| ||||||||| || ||||| || | |||| Sbjct 6199 GGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2321 TGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGAGTTGA 2360 |||| ||| ||||||| | |||||| ||||| || ||||| Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8616636922680