Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_026253.1 Length=2661 Score E Sequences producing significant alignments: (Bits) Value seq9745 253 3e-64 >seq9745 Length=7305 Score = 253 bits (280), Expect = 3e-64 Identities = 676/1016 (67%), Gaps = 48/1016 (5%) Strand=Plus/Minus Query 1562 TGCGTTTTCCTCTTTTTCGAGGAAATCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAG 1621 |||||| | |||| || || || ||||||||||| | ||| |||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1622 CACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTATTTACAATTTGACTG 1681 | ||||| || || || ||||||| || || ||||| |||||| | | ||| |||| Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1682 CCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAATGCTTTAGCTTTAGGTATTGGGGACT 1741 ||| || ||| |||||| || |||||||| |||| |||| | | | ||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAAT------AACGCGGATC 6646 Query 1742 GACGTCATCGATGACGTTATGCTCCACATCGTTGGAGTA-GACCCGGGAATTGAAGTCCA 1800 |||| ||| |||||||| | | |||| ||| ||| | || || | || Sbjct 6645 AACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATA-TCAT 6587 Query 1801 GATGGCCACTCAAGTAATTATGTGGGCCTAAAGCACGAGCCCACATCGTCTTGCCAGTTC 1860 ||| || | |||||||| ||||||||||| | | |||||| || || || ||||||| Sbjct 6586 AATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTC 6527 Query 1861 TTGAACCACCTTCAACTATCAAACTTATGGGCCTCTCTGGCCGCGCAGCGGAACCCCTCC 1920 | | ||||||| || | | ||| || || | | |||| | ||| || || || Sbjct 6526 TAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCA 6470 Query 1921 CAAAATAATCGTCAGCCCACTCTTGCATCTGGTTGGGCACGTTAGTGAATGA---GGAAA 1977 ||| | || ||| |||| ||||| | | || ||||| | |||| ||| | Sbjct 6469 CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATA 6410 Query 1978 GGGGAAATGGAGGGGCCCATGGCTCTGGAGG--CTTGATGAAAATCCTGTCCAGGTTACT 2035 ||| |||| | || | || || | || ||| ||| | |||| ||| Sbjct 6409 C---AAAAGGAGAAACATATATTGCAGGTGGAGCCTG--GAATATCATATCCAAATTAGC 6355 Query 2036 TGATAGGTTGTGATACTGGAAA--AGAAACTTTTCCGGCAACTTCTCTTTAATGATTTTC 2093 || | ||| | | ||| | || ||||| ||| || || |||| || | Sbjct 6354 ATTTAATCTATGAAAACGTAAATAATAATCTTTTG-GGCGTTTT-TCCCTAATTATCTCT 6297 Query 2094 ATCGCCTCCTCCTTCGACGGCGCATTTAACGCCTCAGCTGCAGCGTCATTAGCTGTCTGT 2153 | || | || ||| | ||||| || || || | | |||||||| | ||| Sbjct 6296 AAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGT 6237 Query 2154 TGACCTCCCCTAGAACTT------CTGCCGTCGATCTGAAACTCACCCCATTCGAGGGTG 2207 ||||| || || | | || || || || ||||| || || ||||| || | || Sbjct 6236 TGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTA 6177 Query 2208 TCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGTTC 2267 ||||||| ||| ||||| || ||||| |||| |||||| |||||| ||||||| ||||| Sbjct 6176 TCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTT 6117 Query 2268 GGATGGAAATGTGCTGACCGTGATGGGGAAACCAGGTCGAACAGTCTGTTATTTGTG-AT 2326 ||||||||||||| ||||| | ||| || || || ||||| | ||||||||| ||| || Sbjct 6116 GGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCAT 6057 Query 2327 CTGGACCTTTCCCTCCAATTGCAACAGGATGTGGAGGTGAGGTTGCCCATCGTCGTGAAG 2386 || | ||| || || ||||| | || | |||||| |||||| || | || ||| Sbjct 6056 GTGTA-CTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGC 5998 Query 2387 CTCTCTGCAGATCTTGATGAACTT----TTTATTGGAGGGTAATTGAACAGCTTG--CAA 2440 |||||||| ||||||||| | || |||| || ||||| || | ||| || Sbjct 5997 TTCTCTGCAAATCTTGATGTATTTCTTGTTTACTG--GGGTATTT--AGGTTTTGAATAA 5942 Query 2441 TTGGGAAAGTGCTTCCTCTTTTGTAAGAGAGCACTGAGGATAAGTCAGGAAAATATTTTT 2500 || || || ||||||||||||||||||||||| || ||||| || || ||||||||||| Sbjct 5941 TT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Query 2501 AGCTTGGAGTCTAAAACGACGTGGTTTGGATGGCATTTTTGTAAATAAGAGGGTGT 2556 || | | ||||||| | | | |||||| ||||||| ||| || ||| Sbjct 5883 AGAAGAAATGCGAAAACGA---GAACTCGTTGGCATATTTGTAAGTAAATGGATGT 5831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8328147607020