Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_026514.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq9745 183 5e-43 >seq9745 Length=7305 Score = 183 bits (202), Expect = 5e-43 Identities = 245/337 (73%), Gaps = 14/337 (4%) Strand=Plus/Minus Query 2227 TCTTGCATCTATCTGGAATTCCCCATGGTCGATGAAGTCTCCTCCTTTCTCAATATATGT 2286 |||| |||| ||||||||||| || || || ||||| ||||| ||||| | Sbjct 6213 TCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGA 6154 Query 2287 CTTGACATCTGACGAGCTC---TTAGCTCCCTGAATGTTCGGATGGAAAGGTGTTGATCT 2343 ||| || | | ||||| ||| ||||||| ||||| ||||||||| ||||||| || Sbjct 6153 CTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2344 GTTTGGGGAAACCAGGTCGAAGAATCTCTGATTTGTGCACTGGTATTTTCCTTCGAATTG 2403 | |||| || || || ||||||||||| | ||| ||||| ||| || ||||||||||| Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2404 TAATAGCACATGGAGATGAGGTTCCCCATTCTGGTGGAGTTCTCTGCAAACCCTAATGAA 2463 | ||||| |||||| ||||||||| || | || ||||||||||| | | ||| | Sbjct 6036 GATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTA 5977 Query 2464 TTTTATATTTACT--GGTATTT--GTTTGGCGAGAAGAAGAGATAGGGTTTCCTCTTTGC 2519 ||| | |||||| ||||||| |||| ||| || || || | ||||||||| Sbjct 5976 TTTCTTGTTTACTGGGGTATTTAGGTTT----TGAATAATTGAGAGAGCTTCCTCTTTTG 5921 Query 2520 TCAGAGAGCATTGAGGATATGTGAGGAAGTAATTTTT 2556 | |||||||| || |||||||| || || |||||| Sbjct 5920 TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Score = 181 bits (200), Expect = 2e-42 Identities = 256/358 (72%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 1640 TCATCGAGGAATTCTTTATAAGAGGACTGTGGTCCTGGATTGCAGAGGAAGATAGTGGGA 1699 || || || || ||||||||| || | |||||||||||||| |||||||| ||||| Sbjct 6806 TCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGC 6747 Query 1700 ATACCACCTTTAATTTGAACTGGTTTCCCGTACTTGATATTGCTTTGCCAGTTGTGCTGG 1759 || || ||||||| || || || || ||||| | |||| ||||| | | | Sbjct 6746 ATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTG 6687 Query 1760 GCCCCCATGAACTCTTTGAAATGTTTCAGATAGTGCGGATCGACGTCATCAATGACGTTA 1819 ||||||||||| || || |||||||| | ||| ||||||| |||| |||||||||||| Sbjct 6686 GCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTG 6627 Query 1820 TACCAGGCATTATTGCTGTACACCTTATTTGAC--AAATCCAAATGGCCACACAAATAAT 1877 |||||||||| |||| ||| || || || | | | ||| |||| || || || |||| Sbjct 6626 TACCAGGCATCATTGTTGT--ACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAAT 6569 Query 1878 TGTGAGGGCCCAATTGCCGGGCCCACATTGTCTTACCTGTCCTACTGGACCCCTCAATGA 1937 |||| ||||| ||| | ||||| ||||| || || || ||| || || | | Sbjct 6568 TGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAA 6509 Query 1938 CTATACTTTTGGGTCTTTGTGGCCGCGCAGCGGGACCCATGACATTTTCAGCTACCCA 1995 ||||||| | |||| || |||| | ||| || || || || ||||| | ||||| Sbjct 6508 CTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCA 6451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8572253951040