Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_026760.1 Length=2932 Score E Sequences producing significant alignments: (Bits) Value seq9745 342 9e-91 >seq9745 Length=7305 Score = 342 bits (378), Expect = 9e-91 Identities = 676/989 (68%), Gaps = 31/989 (3%) Strand=Plus/Minus Query 1776 GGAGAGAAAGACAAAGACGGCATTTCCTAAAGCCCAATTTTTCAAATTTGAATTCTTCTC 1835 || ||| || | ||||| |||||| | |||||| || | | || ||||| || Sbjct 6867 GGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATC 6808 Query 1836 TTCGTCCAACCACTCTTTATAACTGCTTGTAGGCCCAGGATTGCAGAGGAAGATTGTTGG 1895 |||||| | ||||||||||||| | || || |||||||| ||||||||||| || Sbjct 6807 TTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGG 6748 Query 1896 TATGCCCCCTTTAACAAGTAGTGGCTTTCCATA-CTTCGTATTGCTTTGCCAGTCTCTCT 1954 || || |||||||| | |||||||| || |||| |||| ||||| || || | Sbjct 6747 CATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTT 6689 Query 1955 GGGACCCACAGAACTCTTTAAAGTGCTTCAGATAATGCGGATCGACGTCATCAATGACGT 2014 || ||| ||| || ||||| || || | |||| ||||||| |||| ||||||||||| Sbjct 6688 TGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGT 6629 Query 2015 TGTATAACGCATCATTGCTAAACACCTTGGGAGAGAGATCAAGATGTCCACATAAGTAAT 2074 |||| | ||||||||| | || || || | |||| ||| || |||||||||| Sbjct 6628 TGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAAT 6569 Query 2075 TATGTGGTCCTAAGCTTCTGGCCCACTCAGTTTTTCCAGTTCTTGTTTCTCCCTCAATAA 2134 | ||||| ||||| ||| ||||| ||||| |||||||| | || || || | || Sbjct 6568 TGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAA 6509 Query 2135 AAATACTCTTCGGTCTTCTTGGCCGCGCAGCGGGATCACTTACAATATTAACACTCACCC 2194 |||||| | |||| |||| | ||| || |||| |||| || | |||| Sbjct 6508 CTATACTCATAGGTCGGTGAGGCCTCCCAGAGG---CACTCACAACGTTTTCTTCAACCC 6452 Query 2195 AATCATCTAACTCCTCTGGCACATTATTAAAAGAA---GA-ACTAAGATAAATACATCTA 2250 | || | | ||| || || || ||||| | | || || || | | |||| || Sbjct 6451 AGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATA 6392 Query 2251 AAGGGCTCCGGAGGAGCCATAAATATTTTGGCTGCATTAGCAGACAAATTATGATACTGC 2310 | | || |||||| ||||| | | ||||||| || ||||| | | Sbjct 6391 TTG----CAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT 6336 Query 2311 GTATAAAAAGTCTTAGGATCCTTCTCCTTAATTATCTGCAGCGAAGCTGATGCGTCAGG- 2369 |||| || || || || ||| ||||||||| | | |||| || | || Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA---AGGCTGCTGTTTTAGAC 6279 Query 2370 --AGCATTTAATGCTTCTGCGTAGACTTCA---GCTAAATGCTGGCCCTGCCCCCT---- 2420 || ||||| ||||||||||| || ||| || | || || ||| || | | Sbjct 6278 CCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCC--CCTCTTGTAG 6221 Query 2421 -TGCACTTCTGGCATCGATCTGGAAAACTCCATGGTCAAGAAATTCCCCTCCCTTCTCAA 2479 |||| ||| |||| |||||||| |||| |||| || || |||||| | Sbjct 6220 TTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGA 6161 Query 2480 TATAGGTCTTGACATCGGACGCGCTCTTAGCTCCCTGTACGTTTGGATGGAAATGTGCTG 2539 |||| | ||| || | ||| | ||| ||||||||| ||||||||||||||||| || Sbjct 6160 TATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTG 6101 Query 2540 ATCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTCGTGCATGTGTACTTCCCTTCGA 2599 | |||||||| || || || |||||||||| | |||||||||||||||||||||||||| Sbjct 6100 ACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGA 6041 Query 2600 ATTGGATAAGCACGTGGAGATGAGGCTCCCCATCTTCGTGTAGC-TCTCTGCAAACTCTA 2658 |||||||||||||||||||| |||| |||| | ||| || ||| |||||||||| | Sbjct 6040 ATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTG 5982 Query 2659 ACGAATTTCTTATTCGTAGGAGTATTTAGCCCTAGAATTTGTTCTAGGGCTTCTTCTTTG 2718 | | ||||||| || || |||||||| | |||| | || ||||| ||||| Sbjct 5981 ATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTT 5922 Query 2719 CTAAGAGAGCACCTGGGATAAGTGAGGAA 2747 |||||||||| |||||| || || || Sbjct 5921 GTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9181566826550