Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_026761.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq9745 576 2e-161 >seq9745 Length=7305 Score = 576 bits (638), Expect = 2e-161 Identities = 718/977 (73%), Gaps = 14/977 (1%) Strand=Plus/Minus Query 1601 CGAAGATCGCATTCTTTAAAGCCCAATTTTTGAGAGCATTATTCTTCTCTTCATCCAAGA 1660 |||||| ||||| | | |||||| || | ||| ||||| ||||| || | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1661 ACTCTTTATAACTTGAATTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1720 |||||||||||||||| || |||||||||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1721 TAATTTGAACTGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1780 ||| || || ||||||||||| | |||| | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1781 ATTCCTTAAAGTGCTTTAGGTAGTGAGGATCTACGTCATCGATGATGTTATACCACGCAT 1840 |||||||||| || |||| || | ||||| |||| ||| |||| ||| ||||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1841 CATTGCTGTAAACTTTGGGGCTTAGATCTAAATGACCACATAGGTAATTATGAGGCCCTA 1900 ||||| |||| ||| ||||||| ||| ||||||| |||| |||||| || || |||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1901 ATGACCTAGCCCACATCGTTTTACCCGTACGACTGTCTCCCTCAATTACTATACTTTGAG 1960 |||| |||||||| || ||||| || || | | || || || | |||||||| || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1961 GCCTCAGAGGCCGCGCAGCGGGATCGACAACGTTATCGATGGCCCAAACTTCAAGTTCTT 2020 | | |||||| | ||| || | |||||||| || |||| ||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2021 CTGGAACTTGATCAAAAGAAGAACGAGA-AAAAGGAGAAATATAAACATCCATTGGCTCC 2079 | || || | | ||| | | || | ||||||||||| ||| | | ||| || Sbjct 6436 CCGGTACGTTGTTAAATGTA-CTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCC 6378 Query 2080 TGAAAGATTCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGA 2139 || || || | || | ||| |||||||| ||||||| ||| | ||||||| || Sbjct 6377 TGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGG 6318 Query 2140 GCTAGTTCCTTTATTA-CTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCTGCGGC 2198 | |||| | |||| ||||||| || ||| ||| || | || || ||| | || Sbjct 6317 CGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2199 GTAAGCGTCGTTTGCTGTCTGTTGTCCTCCTC------TTGCTGATCTTCCATCGATCTG 2252 |||| | || || || | ||||| || |||| |||| ||||||||||| ||||| Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2253 AAACTCTCCCCATTCGAGAGTGTCCCCGTCCTTGTCGATGTAGGCCTTGACATCTGAGCT 2312 || |||||||| || | || || |||| ||| ||||| || | ||| || | ||||| Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCT 6139 Query 2313 TGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTC 2372 |||||| ||||||| ||||| ||||||||||||| |||||||||||| || || || || Sbjct 6138 GGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATC 6079 Query 2373 GAAGAATCTCTGATTCTTGCACTGGTATTTCCCCTCGAACTGGATGAGCACGTGCAGATG 2432 ||||||||| | |||| |||| ||| ||||| ||||| ||||| |||||||| ||| | Sbjct 6078 GAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACG 6019 Query 2433 AGGTTCCCCATCTTCGTGAAGCTCTCTGCAGATCTTGATGTATTTTTTGGATGTTGGGGT 2492 |||||||| | ||| ||| |||||||| |||||||||||||| ||| | |||||| Sbjct 6018 AGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGT 5959 Query 2493 TTCTAAGTTTT--TTAATTGGGAAAGTGCTTCCTCTTTTGTTAGAGAGCACTTGGGATAA 2550 | || ||||| ||||| || || |||||||||||||| |||||||| | |||||| Sbjct 5958 ATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATAT 5901 Query 2551 GTGAGAAAATAATTTTT 2567 || |||||| |||||| Sbjct 5900 GTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8629317771720