Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_026763.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq9745 594 9e-167 >seq9745 Length=7305 Score = 594 bits (658), Expect = 9e-167 Identities = 698/938 (74%), Gaps = 18/938 (2%) Strand=Plus/Minus Query 1645 TTCTTGTCCTCGTCCAAGTACTCTTTATATGATGACGTTGGTCCTGGATTGCATAAGAAG 1704 ||||| || ||||| | |||||||||| ||| | |||||||||||||| | |||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1705 ATTGTCGGGATACCGCCTTTAATTTGAATTGGTTTCCCGTATTTCGTGTTGCTTTGCCAG 1764 ||||| || || |||||||||| || || || || |||||| | | || ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1765 TCCCTTTGGGCCCCCATGAATTCTTTGAAATGTTTCAGATAGTGGGGGTCGACGTCATCT 1824 || |||| ||||||||||||||| || |||||||| | ||| | || || |||| ||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1825 ATGACGTTATACCATGCGTCGTTGCTGTAGATCTTTGGGCTTAGATCTAGATGTCCGCAC 1884 |||||||| ||||| || || ||| |||| | |||||||||| ||| ||| ||||| Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1885 AAATAATTATGTGGGCCTAATGATCGAGCCCACATAGTTTTCCCTGTTCTACTCGCACCC 1944 || ||||| |||||||||||||||| |||||| || |||||||| |||||| | |||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1945 TCTATCACTATACTCACGGGTCTCCAGGGCCGCGCAGCGGCATCCCTGACGTTTTCCGCT 2004 |||| |||||||||| |||| |||| | ||| |||| | |||||||| | Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2005 GCCCAGCATTCAAGTTCTTCTGGAACTTGATCgaaagaagaagaaaggaaaggagaaaca 2064 ||||| || ||| || || || | | || | | || | |||||||||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2065 aaaacctctaaaggaggtgca---aaaaTCCTATCTAAATTAGCATTTAAATTATGAAAT 2121 | | | ||| || || || ||| |||| |||||||||||||| ||||||| Sbjct 6395 TATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAA 6339 Query 2122 TGTAATACATAATCTTTGGGTGCTAGTTCTTTGATTACAT-TAAGAGCCTCCGACTTACT 2180 |||| ||||||||| || | ||| | |||| | |||| || | | ||| Sbjct 6338 CGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGA 6280 Query 2181 TCCACTGTTAAGTGCTGCTGCGTAAGCGTCGTTGGCTGATTGTTGACCCCCTCTTG---- 2236 ||| || || ||| |||||||| | || || || ||||||||||||||||||| Sbjct 6279 CCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGT 6220 Query 2237 --CTGATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGAGTGTCTCCGTCCTTGTTGAT 2294 | |||| ||| || ||||||||||||||||| || | || ||||||| ||| | ||| Sbjct 6219 TGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGAT 6160 Query 2295 GTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGA 2354 || ||||| |||| ||||||||||||| ||||||| ||||| ||||||||||||| ||| Sbjct 6159 ATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Query 2355 CCTGTTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAA 2414 |||| |||| || || || ||||||||||||||||||||||| |||| ||||||||||| Sbjct 6099 CCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAA 6040 Query 2415 CTGTATAAGCACGTGGAGATGAGGGTTCCCATTTTGATGAAGCTCTCGACAGATTTTGAT 2474 || ||||||||||||||| |||| | || |||| |||| |||| || || ||||| Sbjct 6039 TTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGAT 5980 Query 2475 ATATTTTTTATTTGTGGGGGTATTGAGGTTTTG--TAATTGGGAAAGTGCTTCTTCTTTT 2532 ||||| || ||| |||||||| |||||||| ||||| || || ||||| |||||| Sbjct 5979 GTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTT 5922 Query 2533 GAAAGAGAGCATTCTGGATAAGTGAGGAAATAATTTTT 2570 | ||||||||| | ||||| || || ||| |||||| Sbjct 5921 GTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8569083738780