Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027040.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq9745 527 1e-146 >seq9745 Length=7305 Score = 527 bits (584), Expect = 1e-146 Identities = 696/972 (72%), Gaps = 8/972 (1%) Strand=Plus/Minus Query 1621 GCCCAGGCTTTTAATGCTGAATTCTTATCCTCATTCAGGTACTCTTTATATGATGACGTT 1680 ||||||| || | |||| |||||||| || | || |||||||||| ||| | Sbjct 6836 GCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTG 6777 Query 1681 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCG 1740 |||||||||||||| |||||||| ||||| || |||||||||| || || |||||| ||| Sbjct 6776 GGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCG 6717 Query 1741 TACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGA 1800 || | | || ||||| || |||| ||||||||||||||| ||||| || |||| | Sbjct 6716 TATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAA 6657 Query 1801 TAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCGTTACTGTACACCTTTGGA 1860 || | || || |||| |||||||||||| ||||| ||||| || ||||| ||||| Sbjct 6656 TAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGG 6597 Query 1861 CTGAGATCAAGGTGACCACACAGATAATTATGTGGGCCTAATGATCTGGCCCACATGGTC 1920 || | |||| ||||| || | ||||| ||||||||||||||||| ||||| || || Sbjct 6596 CTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTT 6537 Query 1921 TTACCCGTACGACTATCGCCCTCAATCACAATACTATTGGGTCTCCATGGCCGCGCAGCG 1980 || || || | | || || || | || ||||| | |||| |||| | ||| | Sbjct 6536 TTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAG 6477 Query 1981 GCATCCCTTACATTCTCGGAAACCCATTCTTCAAGTTCTTCCGGAACTTGATCAAAAGNN 2040 ||| | || || || |||||| |||| ||| ||||| || | | ||| | Sbjct 6476 GCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTA 6417 Query 2041 NNNNNNNNNNNNNNNNNNACATAAACCTCTAAAGGAGGTGTAAAAATCCTATCTAAATTA 2100 ||||| | | |||| || ||| |||| |||||| Sbjct 6416 CTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTA 6357 Query 2101 CNnnnnnnnTTATGAAATTGTAATACATAATCCTTAGGGGCTAGTTCCCTAAGTA-CTCT 2159 ||||||| |||| |||||| || ||| | |||||||| || |||| Sbjct 6356 GCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCT 6297 Query 2160 AAGAGCCTCTGACTTACTTCCGCTGTTAAGTGCTGCGGCGTAAGCGTCATTGGCTGTCTG 2219 ||| || ||| ||| || || || ||| | |||||| | ||||| || | || Sbjct 6296 AAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTG 6238 Query 2220 TTGTCCCCCTCGTG------CAGATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGGGT 2273 ||| ||||||| || |||||| ||| || ||||||||||||||||| || | || Sbjct 6237 TTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGT 6178 Query 2274 GTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTT 2333 ||||||| ||| |||||||| ||||| |||| ||||||||||||| ||||||| ||||| Sbjct 6177 ATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTT 6118 Query 2334 CGGATGGAAATGTGCTGACCGGGTTGGGGAGACCAGGTCGAAGAATCTGTTATTCTGGCA 2393 ||||||||||||| ||||| |||||| ||||| || |||||||||||||||||| ||| Sbjct 6117 TGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCA 6058 Query 2394 CTTGTATTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGCGA 2453 |||| ||||||||||| |||||||||||||||||| |||| || | ||| || | Sbjct 6057 TGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGC 5998 Query 2454 TTCTCTGCAGATTTTTATGTATTTTTTATTAGTTGGGGTGTTTAGGTTTTGGATTTGGGA 2513 ||||||||| || || |||||||| || || |||||| ||||||||||| || || Sbjct 5997 TTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGA 5938 Query 2514 AAGTGCTTCCTCTTTGGTTAGAGAGCACTGTGGATAAGTGAGGAAATAGTTTTTGGCATA 2573 || ||||||||||| || |||||||| || ||||| || || ||| ||||| | | | Sbjct 5937 GAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGA 5878 Query 2574 TATTTGAAAACG 2585 || ||||||| Sbjct 5877 AATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8610296498160