Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027129.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq9745 634 1e-178 >seq9745 Length=7305 Score = 634 bits (702), Expect = 1e-178 Identities = 706/934 (76%), Gaps = 16/934 (2%) Strand=Plus/Minus Query 1640 GCAGCATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAG 1699 || || ||||| ||||| || | ||||||||||| || || ||||||||||||||||| Sbjct 6821 GCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAA 6762 Query 1700 AGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGAT 1759 |||||||| ||||| || || ||||||| || || ||||||||||| || |||| | Sbjct 6761 AGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATAC 6702 Query 1760 TGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACG 1819 ||||| || |||| |||||||||||| || ||||| || |||| || | ||||| ||| Sbjct 6701 TGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACG 6642 Query 1820 TCATCAATGACGTTGTACCAGGCCTCATTACTGTAGACCTTGGGACTGAGGTCCAGATGA 1879 | ||||||||||||||||||||| ||||| |||| || || || | || |||| Sbjct 6641 TTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGA 6582 Query 1880 CCACATAGATAATTATGTGGTCCCAATGCACGCGCCCACATCGTCTTCCCCGTCCTACTA 1939 || |||| ||||| ||||| || |||| | ||||| || || ||||| || ||| Sbjct 6581 CCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCC 6522 Query 1940 TCACCCTCTATGACAATACTTATGGGTCGCAAAGGCCGCGCAGCGGCACTGACGACGTTC 1999 ||||| |||| || ||||| || ||||| ||||| | ||| |||||| || ||||| Sbjct 6521 TCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTT 6462 Query 2000 TCGGCAGCCCATTCCTCAAGTTCTTCTGGAACTTGATCAAAGGAAGAAGANNNAAAAGGA 2059 || || |||| || | ||| || || || | | ||| | | || ||||||| Sbjct 6461 TCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGA 6402 Query 2060 GAGACATAAACCTCCATTGGAGGTGTAAAAATCCTATCTAGATTAGCATTTAAATTATGA 2119 || ||||| | | ||||| || ||| |||| | |||||||||||| ||||| Sbjct 6401 GAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGA 6342 Query 2120 AACTG-AAGTACATAATCTTTTGGTGCTAATTCCTTAATGA-CTCTAAGAGCCTCTGACT 2177 || | || || |||||||||||| | |||| |||| | ||||||| || ||| | Sbjct 6341 AAACGTAAATA-ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTT 6284 Query 2178 TACTGCCTGCGTTAAGCGCTGTGGCGTAAGCATCATTGGCTGACTGTTGTCCCCCTCTTG 2237 || || | || || ||| |||||| ||||||| || || ||||| |||||||||| Sbjct 6283 TAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTG 6224 Query 2238 ------CAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCT 2291 ||||||||||||| ||||| || |||||||| || | || ||||||| ||||| Sbjct 6223 TAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCT 6164 Query 2292 CCAGATAGGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTG 2351 | | ||| ||||| |||| ||||| |||||| ||||||| ||||| ||||||||||||| Sbjct 6163 CGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTG 6104 Query 2352 CTGACCTGGTTGGGGATACGAGGTCGAAGAATCGTTTGTTCGTGCACTGGTACTTCCCAT 2411 |||||||||||| || || || |||||||||| || |||||||| ||||||||| | Sbjct 6103 TTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTT 6044 Query 2412 CGAACTGTATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGCAGCT-CTCTGCAGATC 2470 |||| || || |||||||| ||| ||||||||| ||||| || |||| ||||||| ||| Sbjct 6043 CGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATC 5985 Query 2471 TTGATGTATTTTTTGTTTACTGGGGTATGTAGGTTTTG--TAATTGGGAGAGGGTTTCTT 2528 ||||||||||| |||||||||||||||| ||||||||| ||||| ||||| | ||| | Sbjct 5984 TTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCT 5927 Query 2529 CTTTAGTCAGAGAGCATTTGGGATAAGTGAGGAA 2562 |||| || |||||||| | |||||| || || || Sbjct 5926 CTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8581764587820