Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027215.1 Length=2796 Score E Sequences producing significant alignments: (Bits) Value seq9745 542 5e-151 >seq9745 Length=7305 Score = 542 bits (600), Expect = 5e-151 Identities = 708/976 (73%), Gaps = 14/976 (1%) Strand=Plus/Minus Query 1623 GAAGGTTGCATTCTTGAGAGCCCAATTTTTCAATGACAG-GtttttttCTTCATCTAGAT 1681 |||| |||||| |||||||||| || ||| | | ||| || ||||| || ||| Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTT-AATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1682 ATTCTCTATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTT 1741 | ||| |||| ||| | |||||||||||||| |||||||| ||||| || || |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1742 TAATTTGAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGA 1801 ||| || || ||| || |||||| || | || |||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1802 ATTCTTTAAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCAT 1861 |||| ||||| || ||||||||| |||| || |||| |||||||||||||||||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1862 CATTTGAAAATATCTTAGGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTA 1921 |||| | | || ||||| | ||| ||| || || || ||||||||||| |||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1922 ACGATCGTGCCCACATTGTTTTTCCGGTACGACTATCACCTTCGATTACAATACTATCAG 1981 | |||| ||||| |||||||| || || | | |||||||| | || ||||| || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1982 GTCTCCATGGCCGCGCAGCGGAAGACATGACGTTCTCGGACACCCATACCTCAAGTTCCT 2041 ||| |||| | ||| || | || ||||| || ||||| | | ||| || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2042 CTGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAATATAAGGACCTGGAGGCTCCT 2101 | || || | ||||| | | |||| ||||||||||| ||| | || || ||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2102 GAAAAATTCTATCTAAATTANNNNNNNNNNTATGAAACTGTAAAACGTAATCTTTGGGGG 2161 | || || |||| |||||| ||||||| ||||| |||||||| ||| Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2162 CTAGTTCCCTAATGA-CTCTAAGAGCTTCCGACTTACTTCTTGAGTTAAGAGCTGCTGCG 2220 | ||||||||| | ||||||| ||| | | ||| | || || || ||| ||||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2221 TAAGCATCGTTTGCAGATTGTTGTccccccc------TTGCAGACCTTCCATCGATCTGA 2274 ||| |||| || || |||||||| ||||| | ||||||| |||||||| ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2275 AACTCTCCCCAATCGATGGTGTCTCCATCCTTATCGATGTAGGACTTGACATCAGATGAT 2334 || ||||||||||| || || ||||| | ||| ||||| || ||||| || | || Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2335 GATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGATCTACTTGGGGATACCAGGTCG 2394 |||||| ||||||| ||||||||||||||||||||||| || |||| || || || ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2395 AAGAATCTGTTATTTGTGCACTGGTACTTTCCTTCGAACTGAACAAGGGCATGCAGATGA 2454 |||||||||||||| ||||| |||||| |||||||| || | ||| | || ||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2455 GGTTCCCCATTTTCGTGAAGCTCTCTGCAAATTTTAATGTATAATTTATTTACAGGAGTT 2514 ||||||| ||||| ||| ||||||||||| || |||||| || ||||| || || Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTA 5958 Query 2515 TCTAGGGTTTG--TAGTTGGGAAAGGGCTTCAGTTAATGAAAGAGAACACTGGGGATAAG 2572 | |||| |||| || || || || ||||| | || |||||| || |||||||| | Sbjct 5957 TTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATG 5900 Query 2573 TAAGGAAATAATTTTT 2588 | || ||| |||||| Sbjct 5899 TTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8750537110150