Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028046.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq9745 585 5e-164 >seq9745 Length=7305 Score = 585 bits (648), Expect = 5e-164 Identities = 697/940 (74%), Gaps = 18/940 (2%) Strand=Plus/Minus Query 1655 TTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAG 1714 ||||| ||||| || | ||||||||||| || || ||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1715 ATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAG 1774 || | ||| || || ||||||| || || |||||||||||| || |||| | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1775 TCTCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGCGGATCAACGTCATCA 1834 || |||| ||||||||||||||| ||||| ||||||| |||| |||||||||||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1835 ATGACGTTATACCAAGCATCATTGCTGTACACTTTAGGGCTGAGGTCTAAGTGACCACAT 1894 |||||||| ||||| ||||||||| ||||| ||| ||||| | || | ||||| ||| Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1895 AGGTAGTTATGTGGACCCAAAGACCTAGCCCACATGGTCTTGCCAGTCCTACTATCACCC 1954 | ||| || ||||| || || || |||||||| || || || ||||| ||| ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1955 TCAATCACAATACTCATGGGTCTCAAAGGCCGCGCAGCGGCACCCATCACGTTCTCAGAA 2014 || | || |||||||| |||| ||||| | ||| ||||| || ||||| || | Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2015 GCCCAGTCTTCAAG-TTCTGCCGGAACTTGATCGAAAGAAGAAGATAGAAAAGGAGATAC 2073 ||||||||| ||| ||| |||| || | | || | | |||| ||||||||| || Sbjct 6455 ACCCAGTCTTGAAGAATCT-CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAAC 6397 Query 2074 ATAAACCTCCGGTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTG 2133 ||| | | ||||||| || ||| |||| ||||||| |||||| ||||||| | Sbjct 6396 ATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2134 TAAAACATAATCTTTTGGAGCTTTCTCCCTTAAAATATTGAGGGCCGAAGACTTGGACCC 2193 |||| |||||||||||| ||| ||||| | || | | ||| | | || ||||| Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCC 6277 Query 2194 TGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGC 2247 ||||| | || || || || | || || || ||||| ||| |||| | || Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2248 TGATCTGCCATCGATCTGGAAAACTCCAAAGTCAATGAAGTCTCCGTCTTTCTCCACATA 2307 ||||| ||||| |||||||| |||| | ||||| ||||||| ||||| | ||| Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2308 GGCTTTGACATCTGAAGAGCT---CTTAGCTCTCTGAATGTTTGGATGGAAATGTGCTGA 2364 | || || | | ||||| ||| ||| ||| ||||||||||||||||||| ||| Sbjct 6156 CGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Query 2365 CCTGGTTGGGGAAATGAGGTCGAAGAATCTGTTGTTTGTGCATTGATATTTCCCCTCGAA 2424 ||||||||| || | || |||||||||||||| || |||||| || ||||| ||||| Sbjct 6099 CCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAA 6040 Query 2425 TTGGACGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGCAATTCTCTGCAAACCCTAAT 2484 ||||| |||||||| ||| ||||||||| || || || ||||||||||| | | || Sbjct 6039 TTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGAT 5980 Query 2485 AAATAATTTATTCACAGGGGTTTGTAAGTTTTG--TAATTGGGAAAGTGCCTCTTCTTTA 2542 || || || || ||||| | || |||||| ||||| || || || || ||||| Sbjct 5979 GTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTT 5922 Query 2543 GTGAGAGAGCAGTTGGGATATGTGAGGAAATAATTTTTAG 2582 || |||||||||| ||||||||| || ||| |||||||| Sbjct 5921 GTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8591275224600