Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028114.1 Length=2765 Score E Sequences producing significant alignments: (Bits) Value seq9745 535 7e-149 >seq9745 Length=7305 Score = 535 bits (592), Expect = 7e-149 Identities = 698/968 (72%), Gaps = 10/968 (1%) Strand=Plus/Minus Query 1617 TGCATTTTTTAATGCCCAGGCTTTCAGGGGTGCATTTTTATCCTCGTCCAGATATTCTTT 1676 ||||||| | | ||||||| || | | ||| || ||||| ||||| ||| | ||||| Sbjct 6849 TGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTT 6790 Query 1677 ATATGAGGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTG 1736 ||| || | || ||||||||||| |||||||| ||||| || |||||||||| || Sbjct 6789 ATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTA 6730 Query 1737 AATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTT 1796 || ||||| ||||| || |||| ||||| || |||| ||||||||||||||| || Sbjct 6729 AAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTT 6670 Query 1797 AAAGTGCTTCAGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATTGCT 1856 ||| || || | |||| ||||||| |||| |||||||||||||||||| ||||||||| | Sbjct 6669 AAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTT 6610 Query 1857 GTACACCTTGGGGCTCAGGTCAAGATGACCGCACAGATAATTGTGAGGTCCTAATGATCT 1916 |||| || ||||| | ||| ||||||||| | |||||||| || ||||||||||| Sbjct 6609 GTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCT 6550 Query 1917 GGCCCACATTGTTTTGCCGGTACGACTATCACCCTCAATTACTATACTATTCGGCCTCCA 1976 ||||| |||||||| || || | | ||||| || | |||||||| | || | Sbjct 6549 AGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTG 6490 Query 1977 TGGCCGCGCAGCGGCATCCATGACGTTCTCGGAAACCCACTCTTCAAGTTGTTCCGGAAC 2036 |||| | ||| |||| || ||||| || |||||| |||| ||| ||||| || Sbjct 6489 AGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTAC 6430 Query 2037 TTGAGTAAAAGAAGAAGATAANNNNNNNNNAACATAAGGAGCCGGTGGCTCCTGAAAAAT 2096 | |||| | | |||| |||||| || ||||| |||| || || Sbjct 6429 GTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATAT 6370 Query 2097 CCTATCTAAATTNNNNNNNNNNNNATGAAATTGCAACACAAAATCTTTTGGTGCTAATTC 2156 | |||| ||||| |||||| | || | |||||||||| | ||| Sbjct 6369 CATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTC 6310 Query 2157 CTTAATGA-CTCTAAGAGCCTCTGACTTACTGCCTGTGTTAAGAGCTGCGGCGTAAGCGT 2215 | |||| | ||||||| || ||| ||| || | || || ||| | |||||| | | Sbjct 6309 CCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACAT 6251 Query 2216 CATTGGCTGATTGTTGTccccccc------TTGCAGATCGTCCATCGATCTGAAATTCTC 2269 |||| || |||||||| ||||| | ||||||||| |||||| ||||| ||||||| Sbjct 6250 CATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTC 6191 Query 2270 CCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAG 2329 |||| || | || ||||||| ||| ||||| || ||||| |||| ||||||||||||| Sbjct 6190 CCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTAC 6131 Query 2330 CTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAAGTAAGGTCGAAGAATC 2389 ||||||| ||||| ||||||||||||| ||||||| |||| || ||| |||||||||| Sbjct 6130 CTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATC 6071 Query 2390 GTTGATTGGTACTATTGTATTTTCCCTCGAATTGAATGAGGGCATGCATATGAGGTTCCC 2449 | ||| || | |||| || || |||||||| || || | || | | ||||||||| Sbjct 6070 TGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCC 6011 Query 2450 CATTCTCGTGGAGC-TCTCTGCAGATTTTGATAAATAGCTTATTTACTGGGGTTTGAAGG 2508 || || | |||| |||||||| || ||||| || ||| ||||||||||| | ||| Sbjct 6010 TGTTTTCAT-GAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGG 5952 Query 2509 GCTCTTATTTGGGAAAGTGCTTCCTCTTTAGTGAGAGAGCATTTGGGATAAGTGAGGAAA 2568 | || || || ||||||||||| || |||||||| | |||||| || || ||| Sbjct 5951 TTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Query 2569 TAAttttt 2576 |||||| Sbjct 5891 ATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8657849682060