Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028124.1 Length=2776 Score E Sequences producing significant alignments: (Bits) Value seq9745 513 2e-142 >seq9745 Length=7305 Score = 513 bits (568), Expect = 2e-142 Identities = 703/969 (73%), Gaps = 21/969 (2%) Strand=Plus/Minus Query 1625 TTATGTATAGCCCACGACCTCAGTGCTGAGTTCTTTTCCTCATCGAGGTATTCTTTATAG 1684 ||||| | |||||| ||| | | |||| |||||| || || || || | |||||||| Sbjct 6844 TTATG-AGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAA 6786 Query 1685 CTGGAATTGGGCCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAATTTGAACT 1744 || || ||||| || |||||||| |||||||| ||||| || || ||||||| || || Sbjct 6785 CTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAG 6726 Query 1745 GGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAG 1804 ||||||||||| || |||| | ||||| || |||| ||||||||||||||| ||||| Sbjct 6725 GGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAA 6666 Query 1805 TGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTTGCTTTCT 1864 || |||| || | ||||| |||| ||||||||||||||||||||| || ||| || | Sbjct 6665 TGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTG--TTGT 6608 Query 1865 AC--CTTAGGACTAAGGTCTAGATGACCACACAAATAATTGTGTGGACCCAAAGACCTAG 1922 || || || || | || |||||| || || ||||||||||| || || || |||| Sbjct 6607 ACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAG 6548 Query 1923 CCCACATGGTCTTCCCCGTTCGACTATCACCTTCTACCACAATACTCATGGGTCTCAATG 1982 |||| || || ||||| |||| | ||||||||||| || |||||||| |||| | Sbjct 6547 CCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAG 6488 Query 1983 GCCGCGCAGCGGCATCCACCACGTTCTCAGCAGCCCAGACTTCAAGTTCTTCCGGAACGG 2042 ||| | ||| |||| ||| ||||| || || ||||| ||| ||| ||||| ||| Sbjct 6487 GCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGT 6428 Query 2043 GaaaaaaaGAAGAAGATAAAAAAGGCGAAACATAAACCTCCAACGGAGGA--CT-AAAAA 2099 ||| | | |||| |||||| |||||||| | | || || ||| || || | Sbjct 6427 TGTTAAATGTACTGGATACAAAAGGAGAAACATATA-TTGCA--GGTGGAGCCTGGAATA 6371 Query 2100 TCCTATCTAAATTAGCATTTAAATTATGAAATTG-AAGTACATAATCTTTTGGTGCTAAT 2158 || |||| |||||||||||||| ||||||| | || || |||||||||||| | | Sbjct 6370 TCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATA-ATAATCTTTTGGGCGTTTT 6312 Query 2159 TCTTTAATTA-CTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGCGCTGCGGCGTAAGC 2217 || |||||| ||||||| || ||| ||| || | || || ||| | |||||| | Sbjct 6311 TCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAAC 6253 Query 2218 GTCGTTGGCTGACTGTTGTCCCCCTC------TTGCAGATCTTCCATCGATCTGAAACTC 2271 || || || || ||||| ||||||| |||||||||||||||| ||||| || || Sbjct 6252 ATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTC 6193 Query 2272 TCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACATCTGAGCTTGACTT 2331 |||||| || | || ||||||| |||||| | ||| ||||| || | ||||| || || Sbjct 6192 TCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTT 6133 Query 2332 AGCTCCCTGAATGGTCGGATGCATATGTGCTGGCCTGGTTCGGCATACCAGGTCGAAGAA 2391 | ||||||| ||| | ||||| | ||||| || ||||||| | | || || |||||||| Sbjct 6132 ACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAA 6073 Query 2392 TCTGTTATTCGTGCAGACGAATTTGCCCTCGAACTGGATGAGCACATGGAGATGAGGGCT 2451 ||||||||||||||| | | || || ||||| ||||| ||||| |||||| |||| Sbjct 6072 TCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTC 6013 Query 2452 CCCATCTTCGTGTAACCCTCTGCAGAGTTTGATGTATTTTTTATTCGCGAGGGTGTGTTT 2511 || | ||| || ||||||| | ||||||||||| || || | |||| | | Sbjct 6012 CCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAG 5953 Query 2512 CCCTTCAATTTCCCTTTGAGCAACCTCTTTAGTGAGTGAGCACTGTGGATAAGTGATGAA 2571 || ||| |||| ||||||| || || ||||| || ||||| || | || Sbjct 5952 GTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Query 2572 ATAATTTTT 2580 | |||||| Sbjct 5892 AATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8692722016920