Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028140.1 Length=2624 Score E Sequences producing significant alignments: (Bits) Value seq9745 370 2e-99 >seq9745 Length=7305 Score = 370 bits (410), Expect = 2e-99 Identities = 706/1030 (69%), Gaps = 30/1030 (3%) Strand=Plus/Minus Query 1502 CCAGGCTTTGAGAGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGCCCCCTC 1561 ||||| || | || |||||| | |||| ||| || || ||||||||||| | Sbjct 6834 CCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGG 6775 Query 1562 GCCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATA 1621 ||||||||||| || | ||||| || ||||| ||||||| || || |||||||| || Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1622 TTTACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCATCTT 1681 | | | || ||||| || | || |||||| |||| || || ||||||| | Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA--- 6658 Query 1682 TTTATGGGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGACTCT 1741 || |||| |||| ||| ||||||||||| ||| || || ||| | | Sbjct 6657 ---ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTT 6601 Query 1742 TGGGTTGAAGTCCAGATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCCACAT 1801 |||| | | || ||| |||| || ||||| |||||||| |||| | |||||| || Sbjct 6600 TGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATAT 6541 Query 1802 CGTCTTCCCCGTCCGACTATCACCTTCAACTATGATACTAATAGGTCTGTCAGGCCGCGC 1861 || ||||| || | | |||||||| || | ||||| ||||||| || ||||| | | Sbjct 6540 TGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCC 6481 Query 1862 AGCGGGATCAACACCGAAATAACTGTCCGCCCACTCTTGCATCTCGTCTGGCACGTTAGT 1921 || || | ||| || | || || |||| ||||| | || || ||||| | Sbjct 6480 AGAGGCACTCACAACGTTTT--CT-TCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTT 6424 Query 1922 GAAGGAGGAGAGTGGAAACGGAGGAGCCCATGGTGACGG---AGCCTTTGCAAATATCCT 1978 || | | | ||| |||| | | || || || ||||| |||||| | Sbjct 6423 AAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGG---AATATCAT 6367 Query 1979 GTCTAAGTTAGCCGACAGGTTGTGATATTG-AAAGAGAAACTTTTCCGGCAGCTTCTCTT 2037 || || ||||| | | ||| | | ||| | || ||| ||| | || || Sbjct 6366 ATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC-GTTTTTCCC 6308 Query 2038 TGATTATTTGCATCGCCTGATCTTTT-GAGGAGGCGTTTAGTGCCTCGGCGGCAGCGTCA 2096 | ||||| | | || || | |||| || | ||||| || || ||| | | ||| Sbjct 6307 TAATTATCTCTAAGGC-TGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCA 6249 Query 2097 TTAGCCGTCTGTTGACCTCCTCTAGCACTT------CTACCGTCGACCTGGAATTCACCC 2150 ||||||| |||||||| ||||| | | || || || || | ||||||||| ||| Sbjct 6248 TTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCC 6189 Query 2151 CATTCGAGGGTGTCACCGTCCTTGTCGATATAGGACTTGACGTCTGACGATGATTTAGCT 2210 || || | || || |||| ||| |||||||| ||||| |||| || |||||| || Sbjct 6188 CAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCT 6129 Query 2211 CCCTGAATGTTAGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAATAATCTG 2270 ||||| ||||| ||||||||||||| |||||||||||| || || || ||||| |||||| Sbjct 6128 CCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTG 6069 Query 2271 TTATTCGTGCAGACGAACTTTCCCTCGAACTGAATAAGCACGTGGAGATGTGGCTCCCCA 2330 ||||||||||| | |||| || ||||| || ||||||||||||||| | || |||| Sbjct 6068 TTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTG 6009 Query 2331 TTTTCGTGAAGTTCTCTGCAGATTTTGATGAACTTCTTGTTCGTTGGGATAGTTAGGGTT 2390 ||||| ||| ||||||||| || |||||| | |||||||| |||| || ||||| || Sbjct 6008 TTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTT 5949 Query 2391 TGTATTTGGGAAAGTGCCTCTTCTTTGGATAAAGAGCACTGTGGATAAGTAAGGAAATAG 2450 || || || || || || ||||| | | |||||| || ||||| || || ||| Sbjct 5948 TGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATA 5889 Query 2451 TTTTTAGAAGAGATACGGAAGCGTTTTGGAGCT-GATGGCATTTTTGTAATAAGAGCGAT 2509 ||||||||||| || || || || || || | |||||| ||||||| | | ||| Sbjct 5888 TTTTTAGAAGAAATGCGAAAACG----AGAACTCGTTGGCATATTTGTAAGTAAATGGAT 5833 Query 2510 GTCACCAATT 2519 |||||||||| Sbjct 5832 GTCACCAATT 5823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8210849753400