Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028142.1 Length=2668 Score E Sequences producing significant alignments: (Bits) Value seq9745 277 3e-71 >seq9745 Length=7305 Score = 277 bits (306), Expect = 3e-71 Identities = 711/1072 (66%), Gaps = 33/1072 (3%) Strand=Plus/Minus Query 1516 TGAGGAAGACGAACGTCGCATTGTGAAGTGTCCAGGCTTTGAGAGATGCGTTTTCCTCTT 1575 ||||||| |||| ||||| || | ||||| || | || |||||| | |||| Sbjct 6865 TGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTT 6806 Query 1576 TGTCGAGGAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGGA 1635 ||| || || |||||||| || | |||||||||||| || | ||||| || | Sbjct 6805 CGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCA 6746 Query 1636 TTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTGCTTTGCCAGTCCCTTTGGG 1695 | |||||||||| || || |||||||||||| | | || ||||| || |||| || Sbjct 6745 TCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGG 6686 Query 1696 CCCCCATCAATTCCTTCCAGTGCTTCAACTTTAGGTATTGCGGTGTGACATCATCGATGA 1755 ||||||| |||||||| | || || || | | |||| || | ||| |||| Sbjct 6685 CCCCCATGAATTCCTTAAAATGTTTTAAAT------AACGCGGATCAACGTTATCAATGA 6632 Query 1756 CGTTATACTCCGCATCGTTTGAGTATACCCTTGGGTTGAAGTCCAGATGTCCGCTTAGAT 1815 |||| ||| ||||| || ||| ||||| | | || ||| |||| || | Sbjct 6631 CGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGT 6572 Query 1816 AGTTATGCGGGCCTAATGCACGAGCCCACATCGTTTTACCCGTTCGACTATCACCCTCAA 1875 | || || |||||||||| | |||||| || ||||| || |||| | ||||| || | Sbjct 6571 AATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTA 6512 Query 1876 CAATCAAACTAATAGGTCTGTTGGGCCGCGCAGCGGGATCAAGCCCAAAATAACTATCCG 1935 ||| | ||| ||||||| || |||| | ||| || || | ||| | || Sbjct 6511 CAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGG---CACTCACAACGTTTTCTTCAA 6455 Query 1936 CCCACTCTTGCATCTCGTCTGGCACGTTAGTGAAGGAGGAGAGTGGAAACGGAGGAGCCC 1995 |||| ||||| | || || ||||| | || | | | ||| |||| | | Sbjct 6454 CCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACAT 6395 Query 1996 ACGGTGACGG---AGCCTTTGCAAATATCCTGTCTAAGTTAGCCGACAGGTTGTGATATT 2052 | || || ||||| |||||| | || || ||||| | | ||| | Sbjct 6394 ATATTGCAGGTGGAGCCTGG---AATATCATATCCAAATTAGCATTTAATCTATGAAAAC 6338 Query 2053 GAAAGAGAAACTTTTCTGGGAGCTTCTCCTTTATTATTTGCATAGCTGCCTCTTTTGAGA 2112 | || | | | || |||| | || ||| | ||||| | | ||||| ||| || Sbjct 6337 GTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACC 6278 Query 2113 AGGCGTTTAGTGCCTCGGCGGCAGCATCATTAGCCGTTTGTTGACCTCCTCTAGCACTT- 2171 | ||||| || || ||| | |||||||||||| ||||||||| ||||| | | || Sbjct 6277 CAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTG 6218 Query 2172 -----CTGCCGTCGACTTGGAATTCACCCCATTCAATGGTGTCTCCGTCCTTGTCGACGT 2226 || || || | |||||||| ||||| ||||| || ||||||| ||| |||| | Sbjct 6217 CAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATAT 6158 Query 2227 AAGACTTGACATCGGAGCTCGATTTAGCTCCCTGGATGTTGGGGTGAAACTGAGTCGATC 2286 | ||||| || | |||||| |||||| ||||||| ||||| || || || || || || | Sbjct 6157 ACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2287 GTTGTGGGTGAGATA-GATCGAACAATCTATTATTTGTG-ATTTGGATTTTCCCCTCAAG 2344 | || || |||| | ||||||| ||||| ||||| ||| || || | || ||| || | Sbjct 6097 -TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTT-CCCTTCGAA 6040 Query 2345 TTGAAGCAACACATGGAGGTGTGGCTCTCCATTGTCGTGACGCTCTCTGCAGATTTTGAT 2404 ||| | | ||| ||||| | || || | || || ||| |||||||| || ||||| Sbjct 6039 TTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGAT 5980 Query 2405 ATATTTCTTGTTTGA--GGGCAACTGAATTGCCTGTAATTGGGAAAGTGCTTCCTCCTTT 2462 |||||||||||| ||| | | || |||||| || || ||||||| ||| Sbjct 5979 GTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTT 5922 Query 2463 GTAATGGAGCACTTTGGATAAGTAAGGAAAATATTTTTGGCTTGTAACCTAAAACGACGT 2522 |||| ||||| | ||||| || || ||||||||||| | | | ||||||| Sbjct 5921 GTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGA--- 5865 Query 2523 GGTTCGGATGGCATTTTTGTAAATAAGAGGGTGTACTCCAATTGATTTCTCT 2574 | | |||||| ||||||| ||| || ||| | |||||| | ||||| Sbjct 5864 GAACTCGTTGGCATATTTGTAAGTAAATGGATGT-CACCAATTTGTATCTCT 5814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8350339092840