Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028262.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq9745 399 4e-108 >seq9745 Length=7305 Score = 399 bits (442), Expect = 4e-108 Identities = 581/825 (70%), Gaps = 20/825 (2%) Strand=Plus/Minus Query 1621 GCATTTTTTAAAGCCCAGGCTTTCAGTGCGCTATTCTTCTCTTCATCCAAGAACTCTTTA 1680 |||||| | | |||||||| || | || ||||| ||||| || | ||||||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1681 TAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGA 1740 || ||||| ||||||||||||||||| |||||||| ||||| || || ||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1741 ACTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTA 1800 | ||||||||||| | | || ||||| || |||| ||||||||||||||| ||| Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1801 AAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTGTACCAGGCATCATTATTG 1860 || || |||| || | ||||| |||| ||||||||||||||||||||||||||| ||| Sbjct 6668 AAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTG 6609 Query 1861 TATACCTTTGGACTAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCCAATGATCTA 1920 || ||||| || | || ||| || || || ||||| ||||| || ||||||||| Sbjct 6608 TACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTA 6549 Query 1921 GCCCACATCGTCTTCCCCGTTCGACTGTCACCCTCTATCACAATACTTATGGGTCTCAAA 1980 ||||| || || ||||| |||| | ||||| |||| || ||||| || |||| | Sbjct 6548 GCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGA 6489 Query 1981 GGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCACTCCTCAAGTTCTTCTGGAACT 2040 |||| | ||| |||||| |||||||| || || |||| || | ||| || || || Sbjct 6488 GGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACG 6429 Query 2041 TGATCAAAGGAAGNNNNNNNNNNNNNNNNNNNNNNNACCTCCACCGGAGGTGTA------ 2094 | | ||| | | || | | | ||||| | Sbjct 6428 TTGTTAAATGTA------CTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGG 6375 Query 2095 AAGATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGT 2154 || ||| |||| |||||| ||||| ||||| | | ||| | ||||||| ||| || Sbjct 6374 AATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGT 6315 Query 2155 TTTTCCCTAATTATTGCTAAAGCAGCTTCAGCCGAGCCTGCATTTAGGGCCTCTGCTGCA 2214 |||||||||||||| |||| || ||| || || | ||||||||| ||||| | Sbjct 6314 TTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAA 6255 Query 2215 GCATCATCAGCTGTCTGTTGACCTCCTC------GAGCAGATCTTCCATCGATCTGAAAC 2268 |||||| ||| | |||||||| |||| |||||||||||||| ||||| || Sbjct 6254 ACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAAT 6195 Query 2269 TGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGAC 2328 | ||||| || || ||| |||| ||||||||| || ||||| || | |||||||| Sbjct 6194 TCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGAT 6135 Query 2329 TTTGCTCCCTGGAAGTTTGGATGGAAATGAGTTGAGGT-ATTAGGGTGAGTTACATCGAA 2387 || ||||||| | ||||||||||||||| ||||| | || | | || | |||||| Sbjct 6134 TTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGA-CAAGATCGAA 6076 Query 2388 ATGTCTGGGGTTTCTGAATTTGGATTTACCTTCGAACTGGATAAg 2432 |||| || || || || | || |||||||| |||||||| Sbjct 6075 GAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAG 6031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8622977347200