Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028985.1 Length=2788 Score E Sequences producing significant alignments: (Bits) Value seq9745 443 4e-121 >seq9745 Length=7305 Score = 443 bits (490), Expect = 4e-121 Identities = 673/958 (70%), Gaps = 16/958 (2%) Strand=Plus/Minus Query 1657 GCCCAGGATTTTAATGCTGAGTTCTTGTCCTCGTCTAAGAACTCTTTATAGCTTGCATTG 1716 |||||||| || | |||| |||||| || ||||| | ||||||||||| |||| ||| Sbjct 6836 GCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTG 6777 Query 1717 GGCCCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGTTTCCCG 1776 || ||||||||||| ||||||||||| || || || ||||||| || || || || ||| Sbjct 6776 GGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCG 6717 Query 1777 TATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGG 1836 ||| || | || | ||||| || |||| |||||||||||| || ||||| || || | Sbjct 6716 TATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAA 6657 Query 1837 AAGTGCGGATCGACGTCATCAATGATGTTATACCAAGCGTCGTTACTGTACACCTTTGGA 1896 | ||||||| |||| |||||||| ||| ||||| || || || ||||| ||||| Sbjct 6656 TAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGG 6597 Query 1897 CTTAGATCTAAATGCCCACATAGATAATTATGTGGGCCTAGTGACCTAGCCCATACGGTC 1956 |||| ||| |||| || |||| ||||| |||||||||| ||| |||||||||| || Sbjct 6596 CTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTT 6537 Query 1957 TTTCCTGTTCTGCTTTCCCCTTCAATCACTATACTAATCGGTCTACTTGGCCGCGCAGCG 2016 || || ||||| || ||||| | |||||||| || |||| |||| | ||| | Sbjct 6536 TTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAG 6477 Query 2017 GCATCGACGACGTTCTCGGCCGCCCACTCTTCAAGTTCTTCTGGAACTTGATCGAACGAA 2076 ||| || ||||| || | |||| |||| ||| || || || | | || | | Sbjct 6476 GCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTA 6417 Query 2077 GAANNNNNNNNNGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAATACCTATCTAAATTA 2136 ||||||||||| || ||||| |||| || | |||| |||||| Sbjct 6416 CTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTA 6357 Query 2137 CAATTTAAATTATGAAATTGGAGTAGAAAGTCTCTTGGGGCTTTCTCCTTCAGTATATTG 2196 |||||| ||||||| | | | | ||| ||||| ||| ||| | | ||| | Sbjct 6356 GCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCT 6297 Query 2197 AGGGCCTGAGCTTTGGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGG 2256 | ||| | ||| ||||| | || | || || || || | || || || ||||| Sbjct 6296 AAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGT 6237 Query 2257 CAACCTCCTC------TAGCTGATCTTCCATCGACCTGGAAAACTCCATGATCAAGGATG 2310 ||| |||| | || ||||||||||| | |||||| |||| ||||| | Sbjct 6236 TGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTA 6177 Query 2311 TCTCCGTCTTTCTCCATGTAGGTTTTGACATCGCTTGAGCT---TTTAGCTCCCTGAATG 2367 ||||||| ||||| || || | || || | | ||||| |||| ||||||| ||| Sbjct 6176 TCTCCGTGCTTCTCGATATACGACTTCACGTAG---GAGCTGGATTTACCTCCCTGTATG 6120 Query 2368 TTCGGATGGAAATGTGCTGACCTGGTTGGGGAGGTGAGGTCGAAGAATCTATTGTTCTTG 2427 || ||||||||||||| |||||||||||| ||| || ||||||||||| || ||| || Sbjct 6119 TTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTG 6060 Query 2428 CACTGGAACTTCCCTTCGAATTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCGTGA 2487 || | ||||||||||||||||||| || || || | |||| || | ||| ||| Sbjct 6059 CATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGA 6000 Query 2488 AGCTCTCTGCAGATTCTAATGAATTTTTTG--GAAGTGGGTGTTTGGAGATTTAATAATT 2545 |||||||| || | ||| |||| ||| | |||| ||| | || ||||||| Sbjct 5999 GCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT 5940 Query 2546 GGGAAAGTGCTTCCTCTTTAGTAAGAGAGCACTTGGGATAAGTGAGAAAATAATTTTT 2603 || || ||||||||||| ||||||||||| | |||||| || |||||| |||||| Sbjct 5939 --GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8730764564040