Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028989.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq9745 470 3e-129 >seq9745 Length=7305 Score = 470 bits (520), Expect = 3e-129 Identities = 698/981 (71%), Gaps = 23/981 (2%) Strand=Plus/Minus Query 1598 CGAAGATTGCATTCTTTACAGCCCAATTTTTAAGTGCGGTATTCTTGTCCTCTTGCAAGA 1657 |||||| |||||| | | |||||| |||| || | ||||| || || | ||||| Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGT-CAAGA 6798 Query 1658 A-CTCTTTATAGCTGGAATGTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCT 1716 | ||||||||| || || | |||||||||||||| |||||||| ||||| || |||||| Sbjct 6797 AACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCT 6738 Query 1717 TTAATTTGAACTGGTTTACCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATG 1776 |||| || || || || ||||| | | || ||||| || |||| |||||||||| Sbjct 6737 TTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1777 AATTCTTTAAAGTGCTTTAGATAATGCGGGTCGACGTCATCAATGACGTTATACCAAGCA 1836 ||||| ||||| || |||| |||| |||| || |||| |||||||||||| ||||| ||| Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1837 GCATTACTGTACACTTTTGGACTTAAATCTAAATGACCGCATAAGTAATTATGTGGTCCT 1896 |||| ||||| |||||| |||| ||| ||||||||||||||||||| ||||| ||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 1897 AATGTCCTGGCCCACATTGTCTTCCCCGTCCTGCTATCACCCTCTATCACTATACTTATC 1956 |||| || ||||| ||||| ||||| || || ||||| |||| |||||||| || Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Query 1957 GGTCTTAATGGCCGCGCAGCGGCACTAACAACATTCGTAGCAACCCACTCCTGAAGTTCT 2016 |||| |||| | ||| |||||| ||||| || ||||||| || ||||| Sbjct 6497 GGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC 6438 Query 2017 TCCGGAACTAGGTCAAAAGAAGAAGA-ACAGAAAGGAGAAATGTACATTTCTATCGGAGG 2075 ||||| || || ||| | | || ||| |||||||||| || ||| | |||| Sbjct 6437 TCCGGTACGTTGTTAAATGTACTGGATACA-AAAGGAGAAACATATATTGCAGGTGGAGC 6379 Query 2076 AGGAAAAATCCTATCTAAATTGCTATTTAAGTGATGAAATTGTAATAAATAATCTTTCGG 2135 | || ||| |||| ||||| |||||| |||||| |||| |||||||||| || Sbjct 6378 CTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2136 GGCCTTTTCCTTTAATATTGTGAGGGCCGATTCTTTAGATCCCGAATTGAGAGCCTCAGC 2195 | |||||| | | ||| | ||| | | |||||| || ||||| || || || || Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2196 ATATGCGTCGTTGGCAGATTGGCAACCTCCTC------TCGCCGATCTTCCATCGATCTG 2249 || | || || || ||||| ||| |||| | || ||||||||||| ||||| Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2250 GAAAACTCCGTGATCAAGAACGTCCCCTTCCTTCTCCATATATGCTTTGACATCTGTTGA 2309 ||| |||| ||||| || || | |||||| ||||| | || || | || Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGA 6142 Query 2310 GCT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAG 2366 ||| |||| ||||||| ||||| ||||||||||||| |||||||||||| || || Sbjct 6141 GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAG 6082 Query 2367 GTCGAAGAATCGTTGGTTTTTGCATTGGAATTTACCTTCGAATTGGATGAGGACATGCAA 2426 |||||||||| | || ||||| | | || |||||||||||||| || || || | Sbjct 6081 ATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Query 2427 GTGAGGAGTCCCATCTTCGTGCAATTCCCTGCAAATCCGGATGAAGCGTTTATTGGT--- 2483 |||| || | ||| || ||| ||||||||| |||| | ||| ||| | Sbjct 6021 ACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTA---TTTCTTGTTTAC 5965 Query 2484 TGGTGTTTCTAGGGCTTGGATTTGGGAAAGTGCCTCTTCTTTGGTGAGAGAGCACCGTGG 2543 ||| || | |||| ||| || || || || || ||||| || |||||||| | || Sbjct 5964 TGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGG 5905 Query 2544 ATATGTGAG-GAAATAGTTTT 2563 |||||| || ||||| |||| Sbjct 5904 ATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8584934800080