Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_029105.1 Length=2700 Score E Sequences producing significant alignments: (Bits) Value seq9745 257 3e-65 >seq9745 Length=7305 Score = 257 bits (284), Expect = 3e-65 Identities = 315/427 (74%), Gaps = 11/427 (3%) Strand=Plus/Minus Query 2163 GCATAACTATCGTTAGCCGTTTGCTGACCTCCTCTAGCACTT------CGTCCGTCGATC 2216 || ||| ||| ||||||| ||| ||||| ||||| | | || | ||| || ||| Sbjct 6260 GCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATC 6201 Query 2217 TGGAATGTTCCCCATTCAAGAGTGTCTCCTTCCTTCTCGACATAGGACTTGACGTCGGAG 2276 |||||| |||||| |||| || ||||| | |||||||| ||| ||||| |||| |||| Sbjct 6200 TGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAG 6141 Query 2277 CTGGAACTAGCTCCCTGATAGTTTCCATGAAAATGGGTTGATCTTGTTGGGGATACCAGA 2336 ||||| || ||||||| |||| ||| ||||| ||||| || ||||| || || ||| Sbjct 6140 CTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGA 6081 Query 2337 TCGAAGAATCTTTGATTTGTGCACTGGTATTTTCCTTCCAGTTGCAGAAGCACGTGGAGA 2396 ||||||||||| | ||| ||||| ||| || ||||| | ||| | ||||||||||||| Sbjct 6080 TCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGA 6021 Query 2397 TGAGGCTCCCCATTTTCATGAAGTTCTCTACATATTTTTATGTATTTCTTGTT--GGTGG 2454 |||| |||| ||||||||| |||||| || || || |||||||||||||| || Sbjct 6020 CGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGG 5961 Query 2455 GTATTTGAAGGTTGAGAATTTGGGAAAGAGCTTCTTCTTTGGTAAGTGTACACTGGGGAT 2514 |||||| ||||| |||| || |||||||| ||||| ||||| | || ||||||| Sbjct 5960 GTATTT--AGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGAT 5903 Query 2515 AAGTGAGGAAATAATTCTTGGCATTTATTTTGAATCGTTTAGGCGGTGGCATTTTTGTAA 2574 | || || ||| ||| || | | || || || | || |||||| ||||||| Sbjct 5902 ATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGAGAACTCGTTGGCATATTTGTAA 5843 Query 2575 -TAAATG 2580 |||||| Sbjct 5842 GTAAATG 5836 Score = 111 bits (122), Expect = 3e-21 Identities = 247/370 (67%), Gaps = 12/370 (3%) Strand=Plus/Minus Query 1580 CCAGGCTTTGAGAGCTGAGTTTTCAGATTTGTCGAGGAAATCTTTATAACTAGCCCCCTC 1639 ||||| || | ||||| ||| | | || ||| || || ||||||||||| | Sbjct 6834 CCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGG 6775 Query 1640 GCCTGGATTGCACAGCACGATTGAAGGAACCCCGCCTTTAATTTGAACAGGCTTTCCGTA 1699 ||||||||||| || | ||||| || | ||||||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1700 CTTGCAATTGGATTGCCAGTCCCTTTGGGCCCCGATAAGTTCCTTCCAGTGCTTTAGCTT 1759 | | ||| | ||||| || |||| |||||| || | |||||| | | | || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAAT------GTTT 6661 Query 1760 TAGATAATGCGGGCTTACATCATCAATGACGTTATAC---TCCACATTGTTCGAGTAAAC 1816 || |||| |||| || | |||||||||||| ||| | ||||||| ||| Sbjct 6660 TAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTT---GTACGT 6604 Query 1817 CCTAGAATTGAAGTCTAGGTGCCCGCTCAAATAATTATGTGGGCCTAACGCTCGAGCCCA 1876 | | | | || || |||| || ||||| ||||||||||| | || |||||| Sbjct 6603 TTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCA 6544 Query 1877 CATCGTCTTTCCCGTTCGAGAATCCCCCTCGATGATCAAGCTAACAGGTCGAACAGGCCG 1936 || || || || |||| || || || || | | | || | |||||| ||||| Sbjct 6543 TATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCT 6484 Query 1937 CGCAGCGGCA 1946 | ||| |||| Sbjct 6483 CCCAGAGGCA 6474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8451785885160