Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_029117.1 Length=2965 Score E Sequences producing significant alignments: (Bits) Value seq9745 156 8e-35 >seq9745 Length=7305 Score = 156 bits (172), Expect = 8e-35 Identities = 222/309 (72%), Gaps = 14/309 (5%) Strand=Plus/Minus Query 2422 TTTAGTGCTTCTGCAGATGCATCATTAACCGTCTGTTGACCTCCTCTTG------CAGAT 2475 ||||| |||||||| | |||||||| ||| |||||||| ||||||| ||||| Sbjct 6272 TTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGAT 6213 Query 2476 CGACCATCGATTTGAAATTGACCCCAGTCGAGGTAATCTCCGTCTTTTTCGATATAGGAC 2535 | ||||| || || |||| ||||| || | |||||||| || |||||||| ||| Sbjct 6212 CTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGAC 6153 Query 2536 TTGACGTCGGAGCTAGATTTAGCTCCCTGGATATTTGGGTGGAAGCTTCTA---CTGGCA 2592 || |||| |||||| |||||| ||||||| || ||||| ||||| | | |||| Sbjct 6152 TTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGG-- 6095 Query 2593 CTTGGATGCCGTAAATCGAAGTGACGGGGGTTACAG-ATTTGTACTTTTCCTTCGAATTG 2651 ||||| | ||||||| | | || | || ||||||| ||||||||||| Sbjct 6094 -TTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTC-CCTTCGAATTG 6037 Query 2652 GATAAGCACATGGAGATGAGGTTCCCCATTCTCGTGTAGTTCTCTTGAGATACGGATGAA 2711 ||||||||| |||||| ||||||||| || || || |||||| | || |||| | Sbjct 6036 GATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTA 5977 Query 2712 TTTCTTGTT 2720 ||||||||| Sbjct 5976 TTTCTTGTT 5968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9286154919500