Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_029648.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq9745 434 2e-118 >seq9745 Length=7305 Score = 434 bits (480), Expect = 2e-118 Identities = 658/938 (70%), Gaps = 12/938 (1%) Strand=Plus/Minus Query 1644 TCCTCGTCTAGGAATTCTTTATAACTGCTGTTTGGACCAGGATTGCAGAGGAAGATTGTT 1703 || ||||| || || ||||||||||| ||| || || |||||||| ||||||||||| Sbjct 6809 TCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTG 6750 Query 1704 GGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTT 1763 || ||||||||||||| || || ||||| ||||| || | || | ||||| || ||| Sbjct 6749 GGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTT 6690 Query 1764 TGGGCCCCCATGAACTCTTTAAAGTGTTTGAGAAAATGCGGGTCGACGTCATCAATGACA 1823 | |||||||||||| || ||||| ||||| | | || |||| || |||| ||||||||| Sbjct 6689 TTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACG 6630 Query 1824 TTATACCAGGCGTCGTTACTGTAGACCTTGGGACTCAGGTCCAGATGTCCACACAAATAG 1883 || |||||||| || || |||| || || || | || ||| || || || || Sbjct 6629 TTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAA 6570 Query 1884 TTATGTGGTCCCAATGACCTAGCCCACATCGTCTTCCCCGTACGACTATCTCCTTCAATC 1943 || ||||| || ||||| |||||||| || || ||||| || | | || ||||| | Sbjct 6569 TTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACA 6510 Query 1944 ACTATACTTTGAGGTCTGTGTGGCCGCGCAGCGGCATCGACAACGTTTTCGGAGACCCAC 2003 |||||||| ||||| ||| |||| | ||| |||| ||||||||||| ||||| Sbjct 6509 ACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAG 6450 Query 2004 TCTTCAAGTTCTTCTGGAACTTGATCGAAAgnnnnnnNNNNNNNNNNNGAAATATAGGGA 2063 |||| ||| || || || | | || | |||| ||| Sbjct 6449 TCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATT 6390 Query 2064 GCCAGTGGCTCCTGAAAGATTCTGTCTAGATTTGCATTTAAATTATGAGATTGTAGTACA 2123 || |||| |||| || || | || | ||| |||||||| ||||| | ||| | Sbjct 6389 GCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAA 6330 Query 2124 AAATCTTTAGGAGCTAGTTCCTTAATGA-CTCTAAGAGCCTCTGACTTACTTCCCGCGTT 2182 ||||||| || | |||| |||| | ||||||| || ||| ||| || | || Sbjct 6329 TAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATT 6271 Query 2183 AAGTGCTGCGGCGTAAGCGTCATTGGCTGTCTGTTGCCCTCCTCTTG------CTGACCT 2236 || ||| | |||||| | ||||| || | ||||| || ||||||| | || || Sbjct 6270 TAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCT 6211 Query 2237 TCCGTCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAGGATTT 2296 ||| || ||||| || |||||||| || | || || |||| ||| ||||| || || || Sbjct 6210 TCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTT 6151 Query 2297 GACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGCTTGG 2356 |||| ||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||| Sbjct 6150 CACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGG 6091 Query 2357 GGAGACCAAGTCGAAGAATCGCATATTCTGGCACTTGAATTTCCCTTCGAACTGGATGAG 2416 ||||| | |||||||||| ||||| ||| || | ||||||||||| ||||| || Sbjct 6090 AGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAG 6031 Query 2417 AACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCCCTCTGCAGATTCTAATATAtttttt 2476 || || | |||| || | ||| ||| ||||||| || | || ||||| || Sbjct 6030 CACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTT 5971 Query 2477 tGAAGTTGGGGTTTGTA--TATTTAATAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAA 2534 |||||| | || | || ||||||| || || ||||||||||| || ||||| Sbjct 5970 GTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAG 5913 Query 2535 CATTTGGGATAAGTGATGAAATAGTTTTTGGAATAAAT 2572 || | |||||| || | ||| ||||| ||| |||| Sbjct 5912 CAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAAT 5875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8603956073640