Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_029804.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq9745 320 3e-84 >seq9745 Length=7305 Score = 320 bits (354), Expect = 3e-84 Identities = 683/1010 (68%), Gaps = 34/1010 (3%) Strand=Plus/Minus Query 1606 GAACAATGGCTCTGTGAG---TGTGATGAATGTTGCATTCTTGATTGCCCAGAGTTTGAG 1662 ||| ||||||| ||||| || || || || |||| ||| |||||| || | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTG---CATTTATGAGAGCCCAGGACTTAAT 6823 Query 1663 GGAAGCATTTTTGTCCTCGTCGAGGTACTCTTTATATGATGATGTTGGACCTGGATTGCA 1722 | || || || || ||||| || |||||||||| ||| | || ||||||||||| Sbjct 6822 AGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCA 6763 Query 1723 GAGGAAGATAGTGGGTATCCCGCCTTTAATTTGAATTGGCTTCCCGTATTTTGTGTTGCT 1782 |||||||| ||||| ||||||||||||| || || ||||| |||||| || | || Sbjct 6762 AAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATA 6703 Query 1783 TTGCCAATTTTGCTGGGCCCCCATGAATTCTTTAAAATGTTTTAGATAATGCGGGTCTAC 1842 ||||||| | ||||||||||||||| ||||||||||||| |||| |||| || || Sbjct 6702 CTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAAC 6643 Query 1843 GTCATCTATGATGTTATACCAGGCATCATTGCTATAGACTTTATTATTGAGATCCAGGTG 1902 || ||| |||| ||| ||||||||||||||| | || ||| | | ||| || Sbjct 6642 GTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATG 6583 Query 1903 TCCACATAGGTAATTATGTGGACCTAGAGAACGTGCCCAAACAGTTTTACCTGTACGACT 1962 || |||| |||||| ||||| |||| || | ||||| | ||||| || || | | Sbjct 6582 ACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGC 6523 Query 1963 ATCACCTTCAATAACAATACTTTGAGGTCTCAATGGCCGCGCAGCGGGACTCTTAACATT 2022 |||||||| | ||| ||||| ||||| |||| | ||| || |||| ||| || Sbjct 6522 CTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTT 6463 Query 2023 TTGGGAAGCCCAGTCTTGGATTATTGTTGGGACATTAGTGAAAGTA---GATATATGGAA 2079 || | |||||||||| | || || || || | || ||| |||| | || Sbjct 6462 TTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACA---AA 6406 Query 2080 AGGAGAGACATATGGTTCGAGGGGTTTTATAAACTCCCTCTCCAAATTA-CTTACAATAT 2138 |||||| |||||| | | | || || | | ||||||||| | | ||| | Sbjct 6405 AGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCT 6346 Query 2139 TGTGCCTCTGCAAGATGAATGTCCACGGCTGTCGTTCTTTGATTATTTTTATAGCACCCT 2198 | || | ||| | ||| || ||| | ||||| | || || | Sbjct 6345 ATGAAAACGTAAATAATAATCTTTTGGGC-GTTTTTCCCTAATTATCTCTAAGGCTGCTG 6287 Query 2199 CGGCAGAACCTGTGTTTAAGGCCTCTGCGCCCAAGTCGTTA--AGATCCTGCTTGCCTCC 2256 ||| || | |||| ||| |||||| | || ||| ||| || | || || Sbjct 6286 TTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGAT--TGTTGACCCCC 6229 Query 2257 TC------TAGCAGATCTGCCGTCGATCTGATATTCTCCCCAGCTGGTTGTGTCGCCGTC 2310 || | |||||||| || || ||||| |||||||||| |||| || |||| Sbjct 6228 TCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTG 6169 Query 2311 CTTGTCGATATAGGACTTGACATCTGAGCTTGATTTAGCTCTCTGAATGTTTGGATGGTA 2370 ||| |||||||| ||||| || | ||||| |||||| ||| ||| |||||||||||| | Sbjct 6168 CTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAA 6109 Query 2371 ATATGCTGACCTGGTTGGGGATTCCAGGTCGAAGAATCTCTGATTTGTGCAGTTGTATTT 2430 || || |||||||||||| || | || ||||||||||| | ||| ||||| |||| || Sbjct 6108 ATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTT 6049 Query 2431 GCCCTGGAATTGAACCAGGGCATGCAGATGAGGTTCCCCAGATTCGTGTAGTTCTCTACA 2490 || | |||||| | || | || ||| ||||||||| ||| || |||||| || Sbjct 6048 CCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCA 5989 Query 2491 CACTTTTATGAATAACTTGTTGACAGG----TGTTGGTTTTGCTTGTAATTGAGAGAG-T 2545 | || ||| || |||||| || || | | ||||||| |||||||||||| | Sbjct 5988 AATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTG--AATAATTGAGAGAGCT 5931 Query 2546 GCCTCATTTTTATCTAATGGGCAGTTTGGATATGTAAGGAAATAATTTTT 2595 |||| ||| || | | ||||| |||||||| || ||| |||||| Sbjct 5930 TCCTCTTTTGTA---AGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8638828408500