Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_029908.1 Length=2610 Score E Sequences producing significant alignments: (Bits) Value seq9745 306 6e-80 >seq9745 Length=7305 Score = 306 bits (338), Expect = 6e-80 Identities = 271/333 (81%), Gaps = 7/333 (2%) Strand=Plus/Minus Query 2103 TCTTCCGTCAACCTGGAACTTTCCCCATTCAATTGTATCTCCGTCCTTGTCGATGTAGGA 2162 |||||| || | |||||| | |||||| |||||||||||||||| ||| ||||| || || Sbjct 6213 TCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGA 6154 Query 2163 CTTGACGTCGGAGCTTGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCGAGA 2222 ||| |||| |||||| |||||| ||||||||||||| ||||||||||||| ||||| | Sbjct 6153 CTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGT 6094 Query 2223 TGGGGAGACCAGATCGAAGAATCTGTTATTCGTGCAGTTGTATTTGCCCTCGAATTGTAT 2282 ||| ||||| |||||||||||||||||||||||||| |||| || || |||||||| || Sbjct 6093 TGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGAT 6034 Query 2283 AAGCACGTGGAGATGAGGCTTCCCATCTTGATGGAGC-TCTCTGCAGATTTTGATGAACT 2341 ||||||||||||| |||| | || | || || |||| |||||||| || |||||| | | Sbjct 6033 AAGCACGTGGAGACGAGGTTCCCTGTTTTCAT-GAGCTTCTCTGCAAATCTTGATGTATT 5975 Query 2342 TCTTGTTCACCGGAGTATTTAGTTTTTG--TAACTGGGAAAGTGCCTCCTCTTTGGTAAT 2399 ||||||| || || |||||||| ||||| ||| | || || || |||||||| |||| Sbjct 5974 TCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAG 5917 Query 2400 GGAGCACTGTGGATAAGTAAG-GAAATAGTTTT 2431 ||||| || ||||| || || ||||| |||| Sbjct 5916 AGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Score = 84.2 bits (92), Expect = 4e-13 Identities = 161/238 (68%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 1458 GAAGACTGCATTCTTTAATGTCCAGTTTTTGAGGGATGCATTTTCCTCTTTGTTGAGGAA 1517 |||||||||||| | | | |||| || | | ||| || | |||| || || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1518 ATCTTTATAGCTTGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATCCCACCTTT 1577 |||||||| |||| || ||||||||||| | ||||| || ||||| ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1578 AATTTGAACTGGCTTGCCGTATTTGCAATTGGACTGCCAGTCTTTTTGTGCTCCCAGCAG 1637 || || || ||||| |||||| | | ||| ||||||| || ||| || |||| | Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1638 CTCTTTCCAGTGCTTTAGCTTTAAATAGTGCGGTGCGACATCATCAATGACGTTATAC 1695 || || | | | |||||||| |||| | || | |||||||||||| ||| Sbjct 6675 TTCCTTAAAAT------GTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTAC 6624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8166466781760