Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_029994.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq9745 372 5e-100 >seq9745 Length=7305 Score = 372 bits (412), Expect = 5e-100 Identities = 682/990 (69%), Gaps = 29/990 (3%) Strand=Plus/Minus Query 1607 CGAAGGTTGCATTTTTAATTGCCCATGCTTTTAGGGCTGCGTTCTTGTCCTCGTCTAAAT 1666 ||||| ||||||| | | ||||| | || | ||||||||||| || ||||| | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1667 ACTCGGTGTATGATGACGTTGGG-CCTGGATTGCAGAGGAAGATTGTTGGGATACCACCT 1725 |||| | || ||| |||||| ||||||||||| ||||||||||| || || || ||| Sbjct 6796 ACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCT 6738 Query 1726 TTAATTTGAATTGGTTTCCCGTACTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATG 1785 |||| || || || || ||||| | |||| ||||| || |||| |||||||||| Sbjct 6737 TTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1786 AACTCCTTAAAGTGCTTTAAGTAGTGGGGATCCACATCATCAATGACGTTGTACCAAGCG 1845 || |||||||| || ||||| || | ||||| || | |||||||||||||||||| || Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1846 TCGTTGCTGTAAACCTTGGGGCTTAAGTCAAGATGGCCACATAGATAGTTATGACGTGGA 1905 || ||| |||| || ||||||| ||| ||| || |||| || || || ||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTG---TGGG 6561 Query 1906 TTTAGTGACCTGGCCCACATAGTTTTCCCTGTCCTGCTATCCCCCTCTATCACAATACTC 1965 || ||| || ||||| || |||||||| || || || || |||| || |||||| Sbjct 6560 CCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTC 6501 Query 1966 ACAGGCCTCCACGGGCGCGCAGCG-CAATCCCTAACATTCTCGGCAGCCCATGTCTC-AA 2023 | ||| | || | | ||| | || || | ||| || || || |||| |||| || Sbjct 6500 ATAGGTCGGTGAGGCCTCCCAGAGGCACTCAC-AACGTTTTCTTCAACCCA-GTCTTGAA 6443 Query 2024 GT-TCTTCGGGAACTTGATCAAAAGAAGAAGATAAAAATGGACAAACAAATTCCTCCAAC 2082 | ||| ||| | ||| | ||| | | |||| ||| ||| ||||| || | || Sbjct 6442 GAATCTCCGGTACGTTGTT-AAATGTACTGGATACAAAAGGAGAAACATATAT-TGCA-- 6387 Query 2083 GGAGGAGCA---AAAATCCTATCTNNNNNNNNNNNNNNNNNNTGAAACTGTAAAACAAAA 2139 || ||||| || ||| |||| ||||| ||||| | || Sbjct 6386 GGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAA 6327 Query 2140 TCTTTGGGAGCTTTCTCCCTCAATATAGACAACGCCGATGACTTTGACCCTGAGTTGATT 2199 ||||| || ||| ||||| | ||| || || | || || ||||| || || | Sbjct 6326 TCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGG 6267 Query 2200 GCCTCGGCATATGCGTCGTTGGCAGACTGGCAACCTCCTCTAG------CTGATCTTCCA 2253 || || || || | || || || || || ||| ||||| | | ||||||||| Sbjct 6266 GCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCA 6207 Query 2254 TCGACTTGGAAAACTCCAGAATCAATGACGTCTCCGTCTTTTTCCATGTAGGTCTTAACG 2313 || | ||||| |||| ||||||| ||||||| || || || || | ||| ||| Sbjct 6206 TCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACG 6147 Query 2314 TCCGACGAGCTC---TTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTAGATGGG 2370 | | ||||| ||| ||||||| ||||| ||||||||||||| |||||| | ||| Sbjct 6146 T---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGA 6090 Query 2371 GATACGAGATCGAAGAATCGTTGATTTGTGCATCTGTATTTTCCCTCGAATTGGATGAGG 2430 || || ||||||||||||| | ||| |||||| |||| || || ||||||||||| || Sbjct 6089 GAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGC 6030 Query 2431 ATGTGGAGATGAGGGCTCCCATCTTCGTGTAGTTCTCTGCAGATTCGTATGAATAATTTG 2490 | ||||||| |||| || | ||| || ||||||||| || ||| || ||| Sbjct 6029 ACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTG 5970 Query 2491 TTTGTTGGTGTATTTAGGGCTTGGATTTGGGAAAGGGCCTCTTCTTTGGTAAGAGAGCAG 2550 ||| ||| ||||||||| ||| || || || || || ||||| |||||||||||| Sbjct 5969 TTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAG 5910 Query 2551 TGTGGGTATGTGAGGAAGTAATTTTTAGAA 2580 || || ||||| || || |||||||||| Sbjct 5909 TGGGGATATGTTAGAAAAATATTTTTAGAA 5880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8648339045280