Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_029995.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq9745 580 2e-162 >seq9745 Length=7305 Score = 580 bits (642), Expect = 2e-162 Identities = 698/942 (74%), Gaps = 19/942 (2%) Strand=Plus/Minus Query 1632 TTAAT-GCTGAATTTTTATCTTCATTCAAGTA-CTCTTTATATGATGATGTTGGTCCTGG 1689 ||||| |||| || |||||||| | |||| | ||||||||| ||| | |||||||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGT-CAAGAAACTCTTTATAACTTGAGTTGGGTCCTGG 6769 Query 1690 ATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTTGT 1749 ||||||||||||||| || || || || ||||||| || || || || ||||| || | Sbjct 6768 ATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCT 6709 Query 1750 GTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGG 1809 || ||||| || |||| ||||||||||||||| ||||| || |||| ||| | || Sbjct 6708 ATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGG 6649 Query 1810 ATCGACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGGCTTAGATC 1869 ||| |||| |||||||||||| ||||| |||||||| |||| ||||||||||| ||| Sbjct 6648 ATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATC 6589 Query 1870 AAGATGTCCACACAAATAATTGTGAGGTCCCAGTGATCTGGCCCACATTGTTTTACCCGT 1929 | ||| || || || |||||||| || || | |||||| ||||| |||||||| || || Sbjct 6588 ATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGT 6529 Query 1930 ACGACTATCACCTTCAATTACTATACTTTTGGGTCTCCATGGCCGCGCAGCGGCACTGAC 1989 | | |||||||| | |||||||| | |||| |||| | ||| |||||| || Sbjct 6528 TCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCAC 6469 Query 1990 GACATTCTCGGCAGCCCATTTCTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAA 2049 || || || || |||| | | ||| || || || | | || | | |||| Sbjct 6468 AACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC 6409 Query 2050 AAAAGGACAAACAAAAACCTCTATAGGAGGGGCA---AAAATCCTATCTAAATTAGAATT 2106 ||||||| ||||| | | | ||| || || || ||| |||| ||||||| ||| Sbjct 6408 AAAAGGAGAAACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCATT 6352 Query 2107 TAAATTATGATATTGTAAAACATAATCCTTAGGGGCTAATTCCTTAAGTACGTTGAGAGC 2166 ||| ||||| | ||||| |||||| || ||| | |||| ||| || | | || Sbjct 6351 TAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGC 6292 Query 2167 CTCCGATTTACTTCCGCTGTTAAGTGCCTTGGCGTAAGCGTCGTTGGCTGATTGTTGACC 2226 | | |||| || || || || | |||||| | || || || ||||||||||| Sbjct 6291 TGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACC 6232 Query 2227 CCCTCTTG------CCGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCC 2280 |||||||| | ||||||||||| ||||| || |||||||| || | || ||||| Sbjct 6231 CCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCC 6172 Query 2281 GTCCTTATCCAGATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATG 2340 || ||| || | ||| ||||| |||| ||||||||||||| ||||||| ||||| ||||| Sbjct 6171 GTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATG 6112 Query 2341 GAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCATCTGTA 2400 |||||||| |||||||||||| || || || |||||||||||||||||||||||| |||| Sbjct 6111 GAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTA 6052 Query 2401 CTTACCTTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCT 2460 ||| |||||||| |||||||||||||||||| |||| || | ||| ||| ||||| Sbjct 6051 CTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCT 5992 Query 2461 GCAGATTTTAATATATTTTTTATTTGTAGGTGTAACTAGGTTTTG--TAATTGGGAAAGT 2518 ||| || || || ||||| || ||| || ||| ||||||||| |||||| || || Sbjct 5991 GCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG- 5933 Query 2519 GCTTCCTCTTTAGTAAGAGAACATTGTGGATAAGTAAGGAAA 2560 |||||||||| |||||||| || || ||||| || || ||| Sbjct 5932 -CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8603956073640