Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_030310.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq9745 358 1e-95 >seq9745 Length=7305 Score = 358 bits (396), Expect = 1e-95 Identities = 589/847 (70%), Gaps = 8/847 (1%) Strand=Plus/Minus Query 1658 TGCATTCTTTTCCTCGTCTAGGAATTCTTTATAGGAGGACGTTGGTCCAGGATTGCAGAG 1717 ||| ||||| || ||||| || || |||||||| || | ||||| |||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1718 GAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTACTTGGTATTGCTTTG 1777 |||||| ||||| || || ||||||| || || ||||||||||| | |||| || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1778 CCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTAGTGCGGATCGACGTC 1837 ||| |||| | |||||||||||| || ||||| || |||| || ||||||| |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1838 ATCAATGACGTTATACCAGGCATCATTGGAATACACCTTTGGGCTGAGATCGAGATGCCC 1897 |||||||||||| ||||||||||||||| ||| |||||||| | ||| ||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1898 ACACAGATAATTGTGTGGTCCCAAAGACCGGGCCCACATTGTCTTCCCGGTCCGACTGTC 1957 || | ||||||||||| || || || | ||||| ||||| ||||| || | | || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1958 TCCTTCGATGACAATACTGATCGGTCTCCATGGCCGCGCAGCGGAACTCTTTACATTTTC 2017 ||||| | || ||||| || |||| |||| | ||| || |||| || ||||| Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2018 CGACGCCCAATTATCAAGTTCCACCGGAACTCTCGAGAAAGAAGAAGAAAGAAATGGAGA 2077 |||| | | ||| | |||| || | || | | || | ||| ||||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2078 AACATAAGGAGCCGGTGGCTCTACAAAAATCTTATCTAAATTACAATTTATATTATGAAA 2137 |||||| || ||||| | || ||| |||| |||||| ||||| ||||||| Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 2138 ATGTAAAACAAAGTCTTTTGGGGCTAATTCTTTAATTATGCCAAGAGCTTCCGACTTACT 2197 | ||||| | | ||||||||| | ||| ||||||| | | ||| | | ||| Sbjct 6339 ACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGA 6280 Query 2198 TCCCGAGTTAATTGCTCTGGCGTAAGCGTCATTTGCAGACTCTTGACCTCCTC------T 2251 || || || | ||| |||||| | ||||| || || | |||||| |||| | Sbjct 6279 CCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGT 6220 Query 2252 TGCAGATCGCCCATCGATCTGAAACTGTCCCCATTCGAGGGTGTCTCCGTCTTTGTCCAG 2311 |||||||| ||||| ||||| || | |||||| || | || ||||||| || || | Sbjct 6219 TGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGAT 6160 Query 2312 GTACGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTGGGGTGGAAACTGGCGCT 2371 |||||||| |||| ||||| |||||| ||||||| ||||| || |||||| | Sbjct 6159 ATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Query 2372 ACTGCTTGGGTGTACACAATCGAAGAGGCGATTGTTGGTACATGTGAGTTTGCCCTCGAA 2431 ||| |||| ||| |||||||| | || || || |||||| || || ||||| Sbjct 6099 CCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAA 6040 Query 2432 CTGCAACAGCACATGAAGATGCGGTTCCCCATCTTGATGCAGC-TCACGGCAGATTTTGA 2490 || | ||||| || ||| | ||||||| | || ||| ||| || | ||| || |||| Sbjct 6039 TTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGA 5981 Query 2491 TGAATTT 2497 || |||| Sbjct 5980 TGTATTT 5974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8661019894320