Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_030403.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq9745 414 2e-112 >seq9745 Length=7305 Score = 414 bits (458), Expect = 2e-112 Identities = 671/959 (70%), Gaps = 16/959 (2%) Strand=Plus/Minus Query 1633 GCCCAAGCTTTCAAAGCTGCATTCTTTTCTTCGTCCAAGAAA-TCTTTATACGAGGACGT 1691 ||||| | || | |||||| ||||| |||||||| |||||| |||||||| || | Sbjct 6836 GCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTC-AAGAAACTCTTTATAACTTGAGTT 6778 Query 1692 CGACCCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATCGGCTTTCC 1751 | || |||||||| |||||||| ||||| || |||||||||| || || |||||||| Sbjct 6777 GGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCC 6718 Query 1752 GTACTTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAG 1811 ||| || | || ||||| || | | ||||||||||||||||||||| || |||| Sbjct 6717 GTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA 6658 Query 1812 ATAGTGCGGGTCGACGTCATCAATGACGTTATACCATGCTTCGTTACTGTACACCTTTGG 1871 ||| |||| || |||| |||||||||||| ||||| || || || ||||| ||||| Sbjct 6657 ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGG 6598 Query 1872 GCTTAGGTCCAAATGACCGCACAGATAATTGTGCGGACCCAACGAACGGGCCCAACAAGT 1931 ||||| || |||||||||| | |||||||| || || || || | ||||| || Sbjct 6597 GCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGT 6538 Query 1932 TTTGCCCGTCCTACTATCCCCCTCTATTACTATACTATTGGGCCTAAAAGGCCGCGCAGC 1991 ||| || || ||| || || |||| |||||||| | || | ||||| | ||| Sbjct 6537 TTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGA 6478 Query 1992 TGCAGGCTTGACGTTTTCACTGACCCATTCTTCAAGTTCCTCCGGAACTCTCGTGAAAGA 2051 ||| | |||||||| ||||| |||| ||| |||||| || | | || | Sbjct 6477 GGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGT 6418 Query 2052 AGACGACCGGAAGGGAGATGTGTATGTTTCCGGCGGAGTCTGGAAAATACGATCTAAATT 2111 | || || ||||| ||| || | || |||| |||||| || ||| ||||| Sbjct 6417 ACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATT 6358 Query 2112 ACTGTTTAAATTGTGAAAATGTAATAAATAATCCTTGGGGGCCAACTCTCGTATTA-CAT 2170 | ||||| | |||||| |||| ||||||| || ||| || | |||| | Sbjct 6357 AGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTC 6298 Query 2171 TAAGAGCCTCCGATTTACTTCCTGTGTTAAGTGCCTTTGCATATGCGTCGTTAGCTGATT 2230 |||| || | | |||| || | || || || | ||| || | || ||||| |||| Sbjct 6297 TAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATT 6239 Query 2231 GTTGGCCCCCTC------GTGCCGATCTCCCGTCGATCTGAAACTCTCCCCATTCGAGTG 2284 |||| ||||||| ||| ||||| || || ||||| || |||||||| || | || Sbjct 6238 GTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTG 6179 Query 2285 TATCTCCGTCCTTGTCCAAATACGACTTGACGTCGGAACTGGACTTAGCGCCCTGAATGT 2344 ||||||||| ||| || | ||||||||| |||| ||| ||||| ||| | ||||| |||| Sbjct 6178 TATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGT 6119 Query 2345 TGGGGTGGAAACTGGTGCTACAGCTTGGGTGTACACAATCGAAGAGACGATTGTTGGTGC 2404 | || |||||| || | | |||| ||| |||||||| | || || |||| Sbjct 6118 TTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGC 6059 Query 2405 ACGTGAGTTTCCCCTCGAACTGGATAAGCACGTGGAGATGAGGCTCCCCATTCTGATGAA 2464 | ||| ||||| ||||| |||||||||||||||||| |||| |||| || | |||| Sbjct 6058 ATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAG 5999 Query 2465 GCTCTCGACAGATTTTGATGTATTTAGGATTTGTGGGAAGCGACAGGTTTCGGAGAAACG 2524 |||| || || ||||||||||| ||| || |||||| | | || | Sbjct 5998 CTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG 5939 Query 2525 CCAAGAGAG---CCTCTTTTGCGATAGAGCATTTGGGATATGTGAGGAATATATTTTTA 2580 |||||| ||||||||| | |||||| | ||||||||| || || ||||||||| Sbjct 5938 ---AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTA 5883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8584934800080