Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_030699.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq9745 540 2e-150 >seq9745 Length=7305 Score = 540 bits (598), Expect = 2e-150 Identities = 732/1015 (72%), Gaps = 18/1015 (2%) Strand=Plus/Minus Query 1588 TGGCTCGGTAAGG---GTGAAGAATTCTGCATTTTTCAGAGCCCACTCTTTTAAAGCTGA 1644 ||||| ||| ||| | ||||| |||||||| | |||||||| || | ||||| Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGA---CTGCATTTATGAGAGCCCAGGACTTAATAGCTGC 6817 Query 1645 GTGCTTGTCCTCGTCCAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCATAGGAA 1704 || ||| || ||||| | |||||||||| ||| | || ||||||||||| ||||| Sbjct 6816 GTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAA 6757 Query 1705 GATAGTGGGAATACCTCCTTTAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCA 1764 ||| ||||| || || ||||||| || || || || |||||| || | || |||||| Sbjct 6756 GATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCA 6697 Query 1765 GTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGGTCTACGTCATC 1824 || |||| ||||||||||||||| ||||| || |||| |||| |||| || |||| ||| Sbjct 6696 ATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATC 6637 Query 1825 AACCACGTTATACCACGCATCATTGCTGTATACCTTTGGACTCAAATCTAGGTGTCCACA 1884 || ||||| ||||| ||||||||| |||| ||||| || | ||| || || || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1885 TAGGTAATTATGGGGCCCTAATGACCTGGCCCACATGGTCTTCCCTGTCCGACTCTCACC 1944 || |||||| || || |||||||| || ||||| || || ||||| || | | |||||| Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1945 CTCTATGACAATACTCATGGGTCTCCAAGGCCGCGCAGCGGCAACCCTTACATTTTCAGA 2004 |||| || |||||||| |||| ||||| | ||| |||| | || ||||| Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTC 6457 Query 2005 AACCCAACACTCTAGTTGTTCTGGAACTTGATTAAAAGAAGATGAAAGAAAAGGACATTT 2064 |||||| | || || || || | ||||| | | || | ||||||| | Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAAC 6397 Query 2065 AAATACCTCTAATGGAGGTGCAAAAATTCTATCTAAATTGGCATTTAAATTATGAAACTG 2124 | ||| | ||||| || || |||| ||||| |||||||| ||||||| | Sbjct 6396 ATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2125 TAAAACATAATCCTTTGGAGCTAATTCCTTAATCACAT-TAAGAGCGTCTGACTTACTTC 2183 |||| |||||| ||||| | |||| |||| | | |||| || ||| ||| | Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACC 6278 Query 2184 CGCTGTTAATCGCCTTGGCGTAAGCGTCATTTGCGGATTGTTGACCCCCTCGTG------ 2237 | || | || | |||||| | ||||| || |||||||||||||||| || Sbjct 6277 CAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTG 6218 Query 2238 CAGATCGTCCGTCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTATCCAAAT 2297 |||||| ||| || ||||| || |||||||| || | || ||||||| ||| || | || Sbjct 6217 CAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATAT 6158 Query 2298 ATGACTTAACGTCGGAACTTGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACC 2357 | ||||| |||| ||| || || ||| ||||||| ||||| ||||||||||||||||||| Sbjct 6157 ACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2358 TGCTTGGGGAGACCAGGTCGAAGAATCTGTTATTTGTGCATTGGTATTTGCCTTCGAATT 2417 || |||| ||||| || ||||||||||||||||| |||||| ||| || |||||||||| Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2418 GCACAAGCACATGGAGATGAGGACTCCCATCTGCATGCAATTCTCGACAGATCTTAATGA 2477 | | |||||| |||||| |||| || | | |||| ||||| || ||||| ||| Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGT 5978 Query 2478 ATAATTTATTCACTGGTGTAGCTAGGTTTTT--TAATTGGGAAAGTGCTTCCTCTTTTGT 2535 || || || ||||| ||| |||||||| |||||| || || ||||||||||||| Sbjct 5977 ATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGT 5920 Query 2536 GAGAGAGCATTTGGGATATGTTATGAAGTAATTTTTGGCATTTATTCTAAAACGA 2590 |||||||| | ||||||||||| || |||||| | | || | ||||||| Sbjct 5919 AAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGA 5865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8638828408500