Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_030700.1 Length=2837 Score E Sequences producing significant alignments: (Bits) Value seq9745 251 1e-63 >seq9745 Length=7305 Score = 251 bits (278), Expect = 1e-63 Identities = 458/672 (68%), Gaps = 12/672 (2%) Strand=Plus/Minus Query 1758 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1817 |||||||||||| |||||||| ||||| || || ||||||| || || ||||| ||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1818 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA 1877 | | | || | ||||| || | | ||||||||||||||| ||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1878 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTTAGGGCT 1937 | || | |||| |||||||||||| ||||| ||| ||| ||||| ||| ||||| Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1938 TAGATCTAAATGCCCACACAAATAATTGTGAGGGCCTAAAGACCTGGCCCATACTGTTTT 1997 || ||| |||| || || || |||||||| |||||||| || || ||||||| |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1998 GCCTATTCT-GCTTGGGCCTTCAATAACAATGGATATGGGTCTATCTGGCCGCGCAGCGG 2056 || |||| || | ||||| | ||| || || |||| | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCT-CACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGG 6476 Query 2057 AATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGGACGGCATTGAAAGAAG 2116 | || || ||||| | ||||||| | ||| || || ||| || || | | Sbjct 6475 CACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTAC 6416 Query 2117 AACNNNNNNNNNNNNNNNNNTATACAGAAGGAGGTGGAGAAAAAATCCTATCTAAATTAG 2176 |||| | ||| || | || ||| |||| ||||||| Sbjct 6415 TGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 2177 AAACTAAATTATGATATTGGAA--AATAAATTTCTCAGGGAGTTTCTCTCTGATTATTTG 2234 | ||| ||||| | | || ||||| || | ||| |||| || || ||||| | Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTTT--GGGCGTTTTTCCCTAATTATCTC 6298 Query 2235 TAACGCAGCTTCTTTTGAACCTGCGTTCAGTGCCTCTGCGGCAGCGTCGTTAGCAGTCTG 2294 ||| || ||| ||| || || | || || || |||||| | | || ||||| | || Sbjct 6297 TAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTG 6238 Query 2295 CTGACCTCCTC------TAGCAGATCTGCCGTCGACCTGGAATTCACCCCAGTCGATGAA 2348 ||||| |||| | |||||||| || || | ||||||||| ||||| || || Sbjct 6237 TTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGT 6178 Query 2349 ATCTCCGTCCTTCTCGATGTATGACTTGACATCTGAGGAGGACTTTGCTGCCTGGAAATT 2408 |||||||| ||||||||| || ||||| || | ||| ||| || || |||| | || Sbjct 6177 ATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTT 6118 Query 2409 TGGATGGAATTG 2420 ||||||||| || Sbjct 6117 TGGATGGAAATG 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8880479892300