Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_030748.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq9745 535 7e-149 >seq9745 Length=7305 Score = 535 bits (592), Expect = 7e-149 Identities = 716/995 (72%), Gaps = 14/995 (1%) Strand=Plus/Minus Query 1595 CGAAGATCGCATTTCTTTGAGCCCAATTTTTGAGTGCGATGTTCTTTTCCTCGTCTAAGT 1654 |||||| |||||| | ||||||| || | || |||||| || ||||| | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1655 ACTCTTTATAGCTCGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTT 1714 |||||||||| || || ||||| ||||||||||| ||||||||||| || |||||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1715 TAATTTGAACTGGCTTTCCGTA-CTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATG 1773 ||| || || ||||||||||| |||| | || | ||||| || |||| |||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTC-TATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1774 AATTCCTTAAAGTGCTTTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCATGAC 1833 ||||||||||| || |||| ||| ||||||| |||| |||||||||||| ||||| | Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1834 TCGTTGCTGTACACTTTAGGACTCAGATCTAGGTGTCCACAAAGGTAATTATGCGGACCC 1893 || ||| ||||| ||| || || | ||| || || || | |||||| || || || Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 1894 AATGACCTGGCCCACATCGTCTTCCCCGTCCGACTATCACCCTCAACGACAATGCTCACC 1953 ||||| || ||||| || || ||||| || | | ||||| || || || || |||| Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Query 1954 GGTCTCAGGGGCCGCGCAGCGGCATCGACAACATTTTCTGCAGCCCACTCTTCGAGTTCT 2013 |||| | |||| | ||| |||| ||||| |||||| || |||| |||| || Sbjct 6497 GGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC 6438 Query 2014 TCTGGAACTCGATCAAAAGNNNNNNNNNNNNNNNNNNAAATATAAACCTCCAACGGAGGT 2073 || || || | ||| | ||| ||| | | |||| Sbjct 6437 TCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCC 6378 Query 2074 GTAAAAATCTTCTCTAAATTGGCATTTAAATTATGATATTGTAATACAAAGTCTTTAGGG 2133 || ||| | || ||||| |||||||| ||||| | |||| | | ||||| ||| Sbjct 6377 TGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGG 6318 Query 2134 GCTAGCTCCCTAAGTAT-TCTAAGAGCTTCCGACTTGCTTCCCGCGTTAAGTGCTGCTGC 2192 | ||||||| ||| |||||| ||| | | || || | || || ||| |||| Sbjct 6317 CGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2193 GTAAGCGTCGTTTGCTGTTTGCTGTCCCCCTCTTG------CAGATCTTCCGTCGACCTG 2246 |||| | || || || | ||| || |||||||||| |||||||||| || | ||| Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2247 GAACTCTCCCCATTCGATTGTGTCTCCGTCCTTATCGATATAGGACTTGACATCGGAGCT 2306 ||| |||||||| || ||||| ||||||| ||| |||||||| ||||| || | |||||| Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCT 6139 Query 2307 GGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGATGGGGATACCAAGTC 2366 ||||||| ||||||| ||||| ||||||||||||| |||||||| ||| || || | || Sbjct 6138 GGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATC 6079 Query 2367 GAAGAATCGCTGATTCTGGCACTTGTATTTCCCTTCGAACTGGATGAGCACGTGTAGATG 2426 |||||||| | |||| ||| |||| ||||||||||| ||||| |||||||| ||| | Sbjct 6078 GAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACG 6019 Query 2427 AGGTTCCCCATTCTCGTGCATTTCCCTGCAGATCTTGATGAATTTTTTATTTGTTGGGGT 2486 |||||||| || || || ||| ||||| ||||||||| |||| || ||| |||||| Sbjct 6018 AGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGT 5959 Query 2487 TTCTAGGTTTT--TTAATTGGGAAAGTGCTTGTTCTTTGGTGAGGGAACATTTGGGATAC 2544 | |||||||| ||||| || || |||| ||||| || || || || | |||||| Sbjct 5958 ATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATAT 5901 Query 2545 GTTATAAAATAATTCTTCGAATTTATAAGAAAACG 2579 |||| |||| ||| || ||| || ||||||| Sbjct 5900 GTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8584934800080