Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_030749.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq9745 583 2e-163 >seq9745 Length=7305 Score = 583 bits (646), Expect = 2e-163 Identities = 715/975 (73%), Gaps = 13/975 (1%) Strand=Plus/Minus Query 1588 GAAGATCGCATTCTTGAGAGTCCAGTTCTTTAGTGCGGTGTTCTTCTCCTCGTCGAGGAA 1647 ||||| ||||| |||||| |||| ||| | || | |||||| || ||||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1648 TTCTTTATAACTGCTGTTGGGGCCAGGATTGCACAGGAAGATTGTCGGTATTCCGCCTTT 1707 ||||||||||| |||||| || |||||||| ||||||||||| || || |||||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1708 AATTTGAACTGGCTTTCCGTATTTCGTATTTGATTGCCAGTCCCGTTGGGCCCCCATGAA 1767 || || || |||||||||||| | |||| | ||||| || | || |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1768 TTCTTTAAAGTGTTTGAGGAAGTGGGGATCTACGTCATCAATGACGTTGTACCAAGCATC 1827 ||| ||||| ||||| | | | ||||| |||| |||||||||||||||||| ||||| Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1828 GTTGCTGTAGACCTTTGGGCTTAGATCCAAATGGCCACATAGATAGTTGTGTGGGCCTAG 1887 ||| |||| |||||||||| ||| |||| || |||| || ||||||||||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1888 AGACCTAGCCCACATCGTCTTCCCGGTACGACTGTCTCCCTCAATCACTATACTCATTGG 1947 || |||||||| || || ||||| || | | || || || | ||||||||||| || Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1948 TCTTAGGGGCCGCGCAGCGGCGTCGACGACGTTCTCGGACGCCCACTCTTCAAGTTCTTC 2007 || | |||| | ||| ||| || ||||| || |||| |||| ||| || Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2008 TGGAACTTGATCGAACGAAGANNNNNNNNNNNNNNAAACATAAACCTCCAGCGGAGGTGT 2067 || || | | || | | ||||||| | | | |||| Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG 6376 Query 2068 AAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAATACATAATCCTTAGGGGC 2127 || ||| |||| |||||||||||||| ||||||| |||| |||||| || ||| Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCG 6316 Query 2128 TAATTCCCTAAGTA-CGCTAAGAGCCTCTGACTTATTGCCTGTGTTAAGTGCTGCTGCGT 2186 | |||||||| || | ||||| || ||| ||| || | || || ||| |||||| Sbjct 6315 TTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2187 AAGCGTCGTTGGCTGATTGTTGACCTCCTCTTG------CAGATCGCCCATCGATCTGAA 2240 || | || || || ||||||||||| ||||||| |||||| ||||| ||||| | Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2241 ATTCTCCCCATTCGAGAATGTCTCCGTCCTTGTGGATGTAGGACTTGACGTCGGAGCTGG 2300 |||||||||| || | | ||||||| ||| | ||| || ||||| |||| |||||||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGG 6137 Query 2301 ATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGA 2360 ||||| ||||||| ||||||||||||||||||| |||||||||||| || || || |||| Sbjct 6136 ATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGA 6077 Query 2361 AGAATCGGTTATTTTTGCATTGGAATTTGCCCTCGAACTGGATGAGCACGTGCAAATGAG 2420 |||||| |||||| ||||| | | || || ||||| ||||| |||||||| | | ||| Sbjct 6076 AGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAG 6017 Query 2421 GTTCCCCATTTTCATGAAACTCTCTGCATATTTTGATGTATTTTTTGGAAGTTGGGGTTT 2480 |||||| ||||||||| |||||||| || ||||||||||| ||| |||||| | Sbjct 6016 GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTAT 5957 Query 2481 GAAGGTTTTG--TAATTGGGAAAGTGCTTCGTCTTTTGTGAGAGAGCATTTAGGATAAGT 2538 |||||||| ||||| || || ||||| |||||||| |||||||| | ||||| || Sbjct 5956 TTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGT 5899 Query 2539 AAG-GAAATAGTTTT 2552 || ||||| |||| Sbjct 5898 TAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8578594375560