Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031306.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq9745 484 1e-133 >seq9745 Length=7305 Score = 484 bits (536), Expect = 1e-133 Identities = 696/978 (71%), Gaps = 16/978 (2%) Strand=Plus/Minus Query 1600 CGAAGATCGCATTCTTTAAAGACCAATTTTTAAGTGCTCTATTTTTCTCTTCATCCAAGA 1659 |||||| ||||| | | || ||| |||| ||| || || ||||| || | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1660 ATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATACCTCCTT 1719 | |||||||| || |||||||||||||||||||| |||||||| ||||| || || |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1720 TAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGA 1779 ||| || || ||||||||||| || |||| | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1780 ATTCTTTAAAGTGTTTTAGATAGTGCGGATCTACGTCATCAATGACGTTGTACCAAGCAT 1839 |||| ||||| ||||||| ||| ||||||| |||| |||||||||||||||||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1840 CATTGTTGTACACTCTAGGGCTTAGATCTAGATGCCCACACAAGTAATTATGTGGTCCCA 1899 ||||||||||| | | ||||||| ||| ||| || || |||||||| ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1900 GTGATCGTGCCCACATCGTTTTTCCTGTTCTACTATCACCTTCAATTACTATACTTTTGG 1959 ||||| ||||| || ||||| || |||||| |||||||| | |||||||| | | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1960 GTCTCAACGGCCGCGCAGCGGCACTGACGACATTCTCGTCTGCCCATTCTTCAAGTTCTT 2019 ||| |||| | ||| |||||| || || || || || |||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2020 CTGGAACTTGATCGAATGAAGAAGATGAAAAAGGAGAAATGTATTCCTCTATCGGAGGAG 2079 | || || | | |||| | ||| ||||||||||| ||| | |||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2080 TAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAATACAAAATCTTTAGGAG 2139 || ||| |||| ||||||| |||||| ||||||| |||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2140 CCTTCTCCTTTAATATATTGAGGGCCGCTGCTTTGGACCCTGAATTGATTGCCTCGGCAT 2199 || ||| | | ||| | | ||| |||| ||| ||||| ||||| | || || || | Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2200 ATGCGTCGTTGGCAGACTGGCAACCTCCTC------TAGCTGATCTTCCATCGACTTGGA 2253 | | || || || || || ||| |||| | || ||||||||||| | |||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2254 AAATTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTGACATCGCTTGAGC 2313 | ||| ||||| | ||||||| ||||| || || | || || | | |||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAG---GAGC 6140 Query 2314 T---TTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGGT 2370 | |||| ||||||| ||||||||||||||||||| ||||||| |||| || || | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2371 CGAAGAATCTATTGTTTCTGCACTGGAACTTCCCTTCGAACTGGATGAGAACATGCAAGT 2430 |||||||||| || || |||| | ||||||||||||| ||||| || || || | Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2431 GAGGAGTCCCATCTTCATGAAGCTCTCTGCAGATTCTAATGAATTTTTTGGAAGTTGGGG 2490 |||| || | ||||||| |||||||| || | ||| |||| ||| ||||| Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2491 TTTGGAGATTT--AAGAATTGGGAAAGTGCCTCTTCTTTAGTGAGGGAGCACTTGGGATA 2548 | | || ||| || |||| || || || || ||||| || || ||||| | |||||| Sbjct 5959 TATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2549 AGTGAGGAAATAAttttt 2566 || || ||| |||||| Sbjct 5901 TGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8607126285900