Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031340.1 Length=2905 Score E Sequences producing significant alignments: (Bits) Value seq9745 199 7e-48 >seq9745 Length=7305 Score = 199 bits (220), Expect = 7e-48 Identities = 567/862 (66%), Gaps = 57/862 (7%) Strand=Plus/Minus Query 1815 CTTCTCCTCATCCAGGAATTCTTTATAGGAGGAATTAGGACCAGGATTGCAAAGGAAGAT 1874 ||| || || || || || |||||||| || || || || ||||||||||||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGAT 6754 Query 1875 TGAGGGCATT--GTCTTTTCCACGTGGATCGGCTTTCCGTATTTTGTGTTGGATTGCCAG 1932 || |||||| | |||| || | | |||||||||||| || | || | ||||| Sbjct 6753 TGTGGGCATCCCGCCTTTA--ACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1933 CCCACCTGGGCCCCCATGAATTCTTTAAAATGTTTTAAATAATGTGGGTCTACATCATCT 1992 | | ||||||||||||||| |||||||||||||||||| | || || || | ||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1993 ATTATATTATAATCTGCATCTAAACTAAATACCTTATCGT--TTAAATCTAAATGGCCAC 2050 || | || || ||||| | ||| || | | ||| ||| |||| || | Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTG--TACGTTTTTGGGCTTATATCATAATGACCGC 6578 Query 2051 TTAAATAATTATGTTTTCCTAGTGCCCTAGCCCATAATGTTTTTCCCGTCCTTGAATCTC 2110 ||| ||||| ||| |||| || |||||||||| |||||| || || || | || | Sbjct 6577 ATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCAC 6518 Query 2111 CCTCTAATACTAATGATTTAGGTCTTAATGGCCCCGCAGGGGCATTCTCTCTCAACTCAC 2170 | |||| |||| |||||| |||| | ||| |||| ||||| Sbjct 6517 CTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCA-----------CTCAC 6469 Query 2171 TAGGGAACGCAGTGGACCCTAACCCACTCTCCCATACCCAATCCCATAATTCATCTGGGA 2230 |||| | | |||||| ||| | | ||| || || | Sbjct 6468 -----AACGTTTTCTTC---AACCCAGTCTTGAAGA----ATC----------TCCGGTA 6431 Query 2231 CATTATTAAAACTATCTAATGAAAATGGAGGTG--TGTATTCCTTAGGGGGTGTTTTAAA 2288 | || ||||| || || ||| |||| | |||| | ||| || | | || Sbjct 6430 CGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGC--AGGTGGAGCCTGGAA 6373 Query 2289 AATGCGACCTAAGTTCCCAACTAAATGATGATAATGCAAAATATAATCTTTTGGGGCTTT 2348 || | | || || || ||| |||| || | ||| ||||||||||||| ||| Sbjct 6372 TATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTT 6313 Query 2349 TTCCTTTAAAATTTGCAATGC--CTGGTCCTTACCTCCTGAATTTAACGCCTCAGCATAA 2406 |||| | | || | || || ||| | ||| || ||||||| || || || ||| Sbjct 6312 TTCCCTAATTATCTCTAAGGCTGCTGTT--TTAGACCCAGAATTTAGGGCTTCTGCGTAA 6255 Query 2407 GCGTCGTTAGCCGATTGCACACCTCCTCT---AGATG---ATCGGCCGTCGATCTGAAAT 2460 | || ||||||||||| ||| ||||| || || ||| || || ||||| ||| Sbjct 6254 ACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAAT 6195 Query 2461 TCTCCCCAGGAGATGACATCTCCGTCCTTCTCGATATAGGACTTGACGTCGGACGAGGAT 2520 |||||||| || |||||||| |||||||||||| ||||| |||| ||| |||| Sbjct 6194 TCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGAT 6135 Query 2521 TTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCGGCTTGGGGATACCAGGTCGAAG 2580 ||| ||||||| ||||||||||||||||||| ||| | | |||| || || || |||||| Sbjct 6134 TTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAG 6075 Query 2581 AATCGTTGATTTGT-CGTCTGGAATTTCCCCTTGAATTGAAGCAGTGCATGCAGATGCGG 2639 |||| | ||| || | | | | | ||||| | |||||| | || | || ||| | || Sbjct 6074 AATCTGTTATTCGTGCATGT-GTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGG 6016 Query 2640 TTGCCCATCTTGATGGGATTCT 2661 || || | || ||| | |||| Sbjct 6015 TTCCCTGTTTTCATGAGCTTCT 5994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9095994750500