Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031448.1 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq9745 178 2e-41 >seq9745 Length=7305 Score = 178 bits (196), Expect = 2e-41 Identities = 616/946 (65%), Gaps = 35/946 (4%) Strand=Plus/Minus Query 1526 TGCGTTTTCCTCTTTGTCGAGGAAACATTTATAACTAGATCCCTCACCAGGATTGCAAAG 1585 |||||| | |||| ||| || || ||||||||| || || ||||||||||| Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1586 CACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGATTG 1645 | ||| || || || ||||||| || || ||||| |||||| | | ||| | || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1646 CCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAATGCTTTAACTTTAGATAGTGGGGTGC 1705 ||| || ||| || || || ||||| || |||| ||||| ||| | || | Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGGATC 6646 Query 1706 TATGTCGTCAATGACGTTGTATT--GCA-CATGGTTTGAATAGACCCGTGAATTGAAATC 1762 | || |||||||||||||| ||| ||| ||| || || | | ||| Sbjct 6645 AACGTTATCAATGACGTTGTACCAGGCATCATTGTTG---TACGTTTTTGGGCTTATATC 6589 Query 1763 TAGGTGGCCGCTCAAATAATTGTGGACCCCCAATGCACGTGCCCACATCGTCTTCCCCGT 1822 || |||| || |||||||| || |||| | ||||| || || ||||| || Sbjct 6588 ATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGT 6529 Query 1823 TCTAGAATCACCTTCGACGATGATACTGATAGGTCTTTCCGGCCGCGCAGCGGCACCTCT 1882 ||||| |||||||| || | ||||| ||||||| | |||| | ||| ||||| | Sbjct 6528 TCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---T 6472 Query 1883 CCCGAAATAATCATCTGCCCAGTCTTGCATC-TCTCTCGGCACGTTAGTGAAAGAGGAGA 1941 | | | | || || |||||||||| | |||| ||| ||||| || ||| | | Sbjct 6471 CACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC-CGGTACGTT-GTTAAAT-GTACT 6415 Query 1942 GGTGA--AACGGAGGAG--TCCATGGCTCC-GGAGCCTTTGCAAAAATTCTGTCCAAATT 1996 || | || |||| | | || || ||||||| || || | |||||||| Sbjct 6414 GGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGG---AATATCATATCCAAATT 6358 Query 1997 GCTAGAGAGGTTGTGATATTGGAAGAGAAACTTTTCTGGTAGTTTCTCTTTTATTATTGT 2056 | | | ||| | | || | | | || ||| |||| || | ||||| Sbjct 6357 AGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTC 6298 Query 2057 CATGGCTTCTTCCTTTGAAGAAGCATTCAGTGCCTCCGATGCTGCATCATTAGTTGTCTG 2116 | |||| || || || || ||| || || || | ||||||||| | || Sbjct 6297 TAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTG 6238 Query 2117 TTGACCTCCTCTAG------CAGATCTTCCGTCGATTTGAAAATGACCCCATTCGACGTA 2170 |||||| ||||| | |||||||||| || || || || | ||||| || | Sbjct 6237 TTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGT 6178 Query 2171 ATCACCGTCTTTCTCGATGTAGGACTTGACATCAGAGGATGACTTTGCACTCTGTATATT 2230 ||| |||| |||||||| || ||||| || | ||| || || | | |||||| || Sbjct 6177 ATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTT 6118 Query 2231 GGCATGGGAGACGGAAGAGGTGTTTGGATGTATGAGGTCGAAGAATCTGCAATTCGTGCA 2290 | |||| | | || || ||||| | || |||||||||||| ||||||||| Sbjct 6117 TGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCA 6058 Query 2291 CTGGAACTTTCCTTGGAATTGAATGAGAGCATGCAAATGCGGTTCCCCATTTTCGTGAAA 2350 | |||| |||| |||||| || || | || | | | ||||||| ||||| ||| Sbjct 6057 TGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGC 5998 Query 2351 TTCTCTGCAGATTCTGATGTATTTCTTGTTGACTGGTGTTTCTAGGTTTTGTAGTTGTTC 2410 ||||||||| || |||||||||||||||| ||||| || | ||||||||| | | || Sbjct 5997 TTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTG-AATAATTG 5939 Query 2411 A-ATTGCACTCTCTTTTGTAACTGAGCATTTGGGGTATGTGAGGAA 2455 | | || ||||||||||| ||||| | ||| ||||| || || Sbjct 5938 AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8236211451480