Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031451.1 Length=2621 Score E Sequences producing significant alignments: (Bits) Value seq9745 140 5e-30 >seq9745 Length=7305 Score = 140 bits (154), Expect = 5e-30 Identities = 241/347 (69%), Gaps = 11/347 (3%) Strand=Plus/Minus Query 1520 TCTTTGTCGAGGAAATCTTTATAGCTA-ATCCCTGACCAGGATTGCAGAGCACGATTGCT 1578 |||| ||| || || |||||||| || | | || |||||||| || | ||||| | Sbjct 6809 TCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTG-T 6751 Query 1579 GGGATCCATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTTACAATTTGACTGCCAGTC 1638 ||| |||||| ||||||| || || ||||| |||||| | | ||| ||||||| || Sbjct 6750 GGG---CATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATC 6694 Query 1639 TTTCTGGGCCCCAATCAGTTCCTTCCAATGCTTTAACTTTAGATATTGCGGACTGACGTC 1698 | | |||||| || | |||||| |||| ||||| ||| ||||| |||| Sbjct 6693 ACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTT 6640 Query 1699 ATCGATGACGTTAAACTCCACTTCGTTTGAGTAAATTCGAGCATTGAAATCCAGATGTCC 1758 ||| |||||||| || | || || ||| || | | | ||| ||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1759 ACTTAAGTAGTTATGTGGGCCTAATGAACGAGCCCACATTGTCTTCCCTGTTCTCGAATC 1818 | |||||| || |||||||||||||| | |||||| ||||| ||||| ||||| | || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1819 ACCTTCTACTATGATACTGATTGGTCTTTCTGGCCGCGCAGCGGAAC 1865 ||||||||| | ||||| || |||| | |||| | ||| || || Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC 6473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8201339116620