Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031452.1 Length=2636 Score E Sequences producing significant alignments: (Bits) Value seq9745 223 6e-55 >seq9745 Length=7305 Score = 223 bits (246), Expect = 6e-55 Identities = 255/340 (75%), Gaps = 6/340 (2%) Strand=Plus/Minus Query 2120 TTGCAGAACGAGCGTCGACCTGGAATTCTCCCCATTCAATGGTGTCTCCGTCCTTGTCGA 2179 ||||||| | | || | ||||||||||||||| ||||| || ||||||| ||| |||| Sbjct 6220 TTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGA 6161 Query 2180 CATAGGACTTGACGTCGGAGCTCGACTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTG 2239 ||| ||||| |||| |||||| || ||| ||||||||||||||||||||||||||| || Sbjct 6160 TATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTG 6101 Query 2240 ACCTATTTGGGGAGACAAGGTCGAAGAATCTCTGATTCTTGCAGTTGAATTTGGCCTCGA 2299 |||| |||| |||||||| ||||||||||| | |||| |||| || | || | |||| Sbjct 6100 ACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGA 6041 Query 2300 ATTGAAGCAGGACATGGAGATGAGGCTGCCCATCGTCGTGAAGCTCTCTTGCGACCTTGA 2359 |||| | || || |||||| |||| | || | || ||| ||||| | ||||| Sbjct 6040 ATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGA 5981 Query 2360 TGAACTTCTTGTT--CGTGGGCGTTTGCAATGATATGATTTGTT-CGAGAGCAGCCTCTT 2416 || | |||||||| | ||| ||| | | | ||| | || |||||| |||||| Sbjct 5980 TGTATTTCTTGTTTACTGGGGTATTT---AGGTTTTGAATAATTGAGAGAGCTTCCTCTT 5924 Query 2417 TAGTTAGTGAGCACCGGGGATACGTGAGAAAATAATTTTT 2456 | || || ||||| ||||||| || |||||| |||||| Sbjct 5923 TTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Score = 89.7 bits (98), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 1508 TTAAT-GCTGCGTTCTCTTCTTTGTCTAGGAAATCTTTATAGCTGGCCCCTTCACCAGGA 1566 ||||| |||||||||| |||| ||| || || |||||||| || | || ||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGA 6768 Query 1567 TTGCAAAGCACGATTGATGGGATGGATCCCGCCTTTAATTTGAACCGGCTTTCCGTATTT 1626 |||||||| | ||||| |||| ||||||||||||| || || |||||||||||| | Sbjct 6767 TTGCAAAGGAAGATTG-TGGGC---ATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCT 6712 Query 1627 GCAGTTCGATTGCCAGTC-CTTTTGAGCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAG 1685 | || | ||||| || |||||| ||| || ||||| || | | | |||| Sbjct 6711 TCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAAT------GTTTTAA 6658 Query 1686 ATAGAGCGGTGCGATGTCATCTATCACGTTGTA 1718 ||| |||| | | || ||| || |||||||| Sbjct 6657 ATAACGCGGATCAACGTTATCAATGACGTTGTA 6625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8248892300520