Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031455.1 Length=2654 Score E Sequences producing significant alignments: (Bits) Value seq9745 228 1e-56 >seq9745 Length=7305 Score = 228 bits (252), Expect = 1e-56 Identities = 651/981 (66%), Gaps = 41/981 (4%) Strand=Plus/Minus Query 1518 GAGTGTCCACGACCTCAAGGCTGCATTTTCCTCTTTGTCCAGGAAGTCTTTATAACTGGC 1577 ||| | ||| ||| | | ||||| || | |||| ||| || || ||||||||||| | Sbjct 6840 GAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGA 6781 Query 1578 CCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTT 1637 ||| |||||||| || | ||||| || ||||| ||||||| || || ||||| Sbjct 6780 GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTT 6721 Query 1638 TCCGTATTTGCAATTTGACTGCCAGTCTCTTTGGGACCCGAGGAGCTCTTTCCAGTGCTT 1697 ||||||| | | ||| ||||||| || |||| || ||| | || || || | || || Sbjct 6720 TCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTT 6661 Query 1698 TAGCTTTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATACTCAGCCTCGTTGGAAAA 1757 || | | ||||| |||| |||||||||||| ||| || || ||| | Sbjct 6660 TAAAT------AACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTA 6607 Query 1758 -GACCCTGGAATTGAAATCCAGGTGTCCACTGAGATAATTGTGGGACCCTAAAGCACGTG 1816 | ||| || | ||| || || | | |||||||| | ||||| | | | Sbjct 6606 CGTTTTTGGGCTT-ATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAG 6548 Query 1817 CCCACATCGTCTTCCCCGTTCGACTGTCACCTTCGACGATGATACTAACAGGCCTGACAG 1876 |||| || || ||||| |||| | |||||||| || | ||||| | ||| | | || Sbjct 6547 CCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAG 6488 Query 1877 GCCGCGCAGCGGCATCTCTCGCAAAATAGTCATCGGCCCACTCCTGCATCTCGTCCGGGA 1936 ||| | ||| |||| ||| ||| | || || |||| || || | ||||| | Sbjct 6487 GCCTCCCAGAGGCA---CTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTA 6431 Query 1937 CGTTAGTGAACGAGGACAG--TCGAAAAGGAGGAG--TCCATGGCTCC-GGCGCCTTTTT 1991 |||| | || | || | | |||||||| | | || || || |||| Sbjct 6430 CGTTGTTAAATGT--ACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG--- 6376 Query 1992 GAAAATCCTGTCCAGGTT-GC-TCGACAGAT-TATGGTACTGGAAC-AGGAACTTTTCCG 2047 ||| ||| | |||| || || | | || |||| | | || | || ||| | Sbjct 6375 GAATATCATATCCAAATTAGCATTTA---ATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2048 GCAACTTTTCTTTGATGATTTTCATGGCCTCCTCCTTCGACGGAGCGTTCAGTGCCTCGG 2107 || ||||| | || || | | ||| | || ||| || || || || || | Sbjct 6318 GCGT-TTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTG 6260 Query 2108 CGGCTGCGTCGTTAGCTGTCTGCTGGCCGCCTCTAGCACTTCGA------CCGTCGACCT 2161 || | || ||||| | || || || ||||| | | || | || || | || Sbjct 6259 CGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCT 6200 Query 2162 GGAACTCTCCCCATTCGATGGTGTCCCCGTCCTTCTCGACATAGGACTTGACGTCGGAGC 2221 |||| |||||||| || || || || |||| |||||||| ||| ||||| |||| ||||| Sbjct 6199 GGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2222 TGGATTTAGCTCTCTGTATGTTCGGATGGAAATGTGCTGACCGGGAAGGGGACACCAGAT 2281 |||||||| ||| ||||||||| ||||||||||||| ||||| || || || || |||| Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2282 CGAACAGTCTGTTATTTGTG-ATCTGGACTTTCCCTTCGAGTTGTAGGAGAATATGGAGG 2340 |||| | ||||||||| ||| || || || |||||||||| ||| | || | ||||| Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTAC-TTCCCTTCGAATTGGATAAGCACGTGGAGA 6021 Query 2341 TGAGGTTGCCCATCGTCGTGAAGCTCTCTGGCGATTTTGATGAACTTCTTGTTCGAAGGG 2400 |||||| || | || ||| |||||| || |||||| | |||||||| ||| Sbjct 6020 CGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGG 5961 Query 2401 AGATGGATACTCTG--TAATTGGGAAAGTGCTTCTTCTTTTGACAGAGAGCACTGTGGAT 2458 || | | || ||||| || || ||||| ||||||| |||||||| || |||| Sbjct 5960 GTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGAT 5903 Query 2459 AAGTGAGGAAGATATTTTTAG 2479 | || || || |||||||||| Sbjct 5902 ATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8305956121200