Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031456.1 Length=2692 Score E Sequences producing significant alignments: (Bits) Value seq9745 208 1e-50 >seq9745 Length=7305 Score = 208 bits (230), Expect = 1e-50 Identities = 248/332 (75%), Gaps = 6/332 (2%) Strand=Plus/Minus Query 2209 CCGTCGATCTGGAATTCTCCCCACTCGATGGTGTCCCCGTCTTTCTCGACATAGGACTTG 2268 || || ||||||||||||||||| || || || || |||| ||||||| ||| ||||| Sbjct 6209 CCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTC 6150 Query 2269 ACGTCGGAGCTCGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTAGGG 2328 |||| |||||| |||||| ||||||| ||||||||||||||||||| ||||||||| || Sbjct 6149 ACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGA 6090 Query 2329 GACACCAGATCGAACTGTCGGATATTTGTG-ATCTGCACTTTCCCTTCGAGTTGTAAGAG 2387 || || |||||||| || | |||| ||| || || || |||||||||| ||| | || Sbjct 6089 GAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTAC-TTCCCTTCGAATTGGATAAG 6031 Query 2388 AATATGGAGGTGAGGTTGCCCATCGTCGTGAAGCTCTCTGGCGATTTTGATGAACTTTTT 2447 | ||||| |||||| || | || ||| |||||| || |||||| | || || Sbjct 6030 CACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTT 5971 Query 2448 GTTCGATGGGAGAGGGATACTCTG--TAATTGGGAAAGTGCTTCTTCTTTTGACAGAGAA 2505 ||| |||| | | | || ||||| || || ||||| ||||||| ||||| Sbjct 5970 GTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAG 5913 Query 2506 CACTGTGGATAAGTGAGGAAAATATTTTTGGA 2537 || || ||||| || || ||||||||||| || Sbjct 5912 CAGTGGGGATATGTTAGAAAAATATTTTTAGA 5881 Score = 93.3 bits (102), Expect = 7e-16 Identities = 241/366 (66%), Gaps = 10/366 (3%) Strand=Plus/Minus Query 1585 CTTAA-AGATGAGTTTTCCTCTTTGTCGAGGAAATCTTTATAGCTGGCCCCCTCTCCAGG 1643 ||||| || || ||| | |||| ||| || || |||||||| || | ||| || Sbjct 6828 CTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGG 6769 Query 1644 ATTGCAAAGCACGATTGAAGGAATTCCGCCTTTAATTTGAACAGGCTTTCCGTACTTACA 1703 ||||||||| | ||||| || || |||||||||| || || ||||||||||| | | Sbjct 6768 ATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCT 6709 Query 1704 GTTGGACTGCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAGTGCTTTAACTTTAGATA 1763 || ||||||| || ||| || || || |||||||| | || ||||| ||| Sbjct 6708 ATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------ATA 6655 Query 1764 TTGCGGACTGACATCATCGATGATGACGTTATACTCCACTTCGTTGGAGTAAACACGAGA 1823 ||||| || | ||| |||||||| ||| | || ||| ||| | Sbjct 6654 ACGCGGATCAACGTTATC---AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGG 6598 Query 1824 ATTGAAGTCCAGGTGTCCACTGAGATAATTATGTAGGCCCAAAGCACGAGCCCACATTGT 1883 | | || || || | | ||||| ||| |||| || | | |||||| ||||| Sbjct 6597 GCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGT 6538 Query 1884 TTTACCTGTTCGAGAATCACCTTCTATGATAATACTGACAGGCCTACAAGGCCGCGCAGC 1943 ||| || |||| || |||||||||| | ||||| | ||| | ||||| | ||| Sbjct 6537 TTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGA 6478 Query 1944 GGCACT 1949 |||||| Sbjct 6477 GGCACT 6472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8426424187080