Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031458.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value seq9745 383 3e-103 >seq9745 Length=7305 Score = 383 bits (424), Expect = 3e-103 Identities = 680/987 (69%), Gaps = 26/987 (3%) Strand=Plus/Minus Query 1466 CGAAGACCACATTCTTGATGGTCCAGTTCCTGAGTGCTGTGTTTTCCTCTTTGTTCAGGA 1525 ||||||| |||| ||| | |||| | | | |||| ||| | |||| || || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1526 AATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCCCCTT 1585 | |||||||| || | || ||||||||||| | ||||| || || || |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1586 TAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAA 1645 ||| || || |||||||||||| | | ||| ||||||| || | | |||||||| | Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1646 GTTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACT 1705 ||| || | || |||| ||| |||| | |||| |||||||||||| ||| Sbjct 6676 ATTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACC 6623 Query 1706 CCACTTCGTTCGAATAGACTCTTGGGTTGAAGTCTAGATGTCCACTAAGGTAATTATGTG 1765 | || || || | ||||| | | || ||| || | | |||||| |||| Sbjct 6622 AGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTG 6563 Query 1766 GGCCTAGGGCACGAGCCCACATCGTCTTCCCTGTCCTCGAGTCACCTTCTACTATGATAC 1825 |||||| | | |||||| || || ||||| || || | ||||||||||| | |||| Sbjct 6562 GGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATAC 6503 Query 1826 TCACTGGTCTCTCCGGCCGCGCAGCGGAACTCCTTCCAAAATATTCGTCCGCCCATGCTT 1885 ||| |||| | |||| | ||| || |||| ||| | ||| || |||| ||| Sbjct 6502 TCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTT 6446 Query 1886 GCATCTCGTCTGGAACTCTAGTGAACGAGGAGAGTTGAAACGGAGGAACCCATTGTTCCG 1945 | | || || || | | || | | | ||| |||| ||| || | | | Sbjct 6445 GAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAG 6386 Query 1946 G---AGCCTTAGCGAATATTTTCTCTAGGTTGGAGCGTATGTTATGGTTTTGCAGCACAA 2002 | ||||| |||||| | || | || | || |||| | | | Sbjct 6385 GTGGAGCCTG---GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAAT 6329 Query 2003 AGTCCTTTGGCTGCTCCTCCTTTAAAACCGCCATGGCAGCTTGAACAGATCCAGCATTCA 2062 | || ||||| | | ||| | | | | | | ||| ||| ||| |||| ||| | Sbjct 6328 AATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTA 6269 Query 2063 ACGCCTTGGCATATGAATCGTTAGCCGATTGTTGACCTCCTCTAG------CAGATCTGC 2116 || | || || ||| ||||||||||||||||| ||||| | ||||||| | Sbjct 6268 GGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTC 6209 Query 2117 CGTCGATTTGGAATTCTCCCCAGTCAACTGTATCTCCGTCCTTCTCGATGTAGGACTTGA 2176 | || || |||||||||||||| |||| ||||||||||| ||||||||| || ||||| | Sbjct 6208 CATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCA 6149 Query 2177 CGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCTGGTTGGGG 2236 ||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | Sbjct 6148 CGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAG 6089 Query 2237 AGACCAAATCGAAGAATCTGTAATTCGTGCACTGGTACTTGCCTTCGAATTGGATGAGAA 2296 |||| | |||||||||||||| ||||||||| |||||| |||||||||||||| || | Sbjct 6088 AGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCA 6029 Query 2297 CGTGGAGATGAGGCTCCCCATTCTTATGGAATTCCCTGCATATTCTGATGAACTTCTGGT 2356 |||||||| |||| |||| || | ||| ||| ||||| || ||||| | |||| || Sbjct 6028 CGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGT 5969 Query 2357 TAACCGGTGTTTTTATGTTT--AGTAACTGGGAAAGTGCTTCTTCTTTGCTAAGAGAGCA 2414 | || || || |||| |||| | ||| | || || ||||| ||||| |||||||||| Sbjct 5968 TTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCA 5911 Query 2415 CTCTGGATATGTGAG-GAAATAGTTTT 2440 | |||||||| || ||||| |||| Sbjct 5910 GTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8163296569500