Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031466.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq9745 488 9e-135 >seq9745 Length=7305 Score = 488 bits (540), Expect = 9e-135 Identities = 674/939 (72%), Gaps = 20/939 (2%) Strand=Plus/Minus Query 1644 TTTTTATCCTCATCCAAGTACTCTTTGTATGATGACGTTGGTCCTGGATTGCAGAGGAAG 1703 || ||||| || || | ||||||| || ||| | |||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1704 ATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAG 1763 || ||||| || || ||||||| || || |||||| ||||| || | || ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1764 TCCCTTTGTGCCCCCATAAATTCTTTAAAATGCTTTAGGTAGTGGGGGTCGACGTCATCA 1823 || |||| |||||||| ||||| |||||||| |||| || | || || |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1824 ATGACGTTGTACCAGGCATCATTACTGTAGACTTTTGGGCTCAGGTCCAGATGTCCACAT 1883 ||||||||||||||||||||||| |||| ||||||||| | || ||| || ||| Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1884 AAATAATTGTGTGGGCCTAAAGACCTGGCCCACATTGTCTTCCCTGTACGACTCTCGCCC 1943 || ||||||||||||||||| || || ||||| ||||| ||||| || | | ||| || Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1944 TCTATGACAATACTTTTAGGTCTCCATGGCCGCGCAGCGGCACCAACAACATTCTCAGCC 2003 |||| || ||||| |||||| |||| | ||| ||||| ||||| || || | Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2004 GCCCACTCTTCAAGTTCTTCTGGAAC-TTGATCGAAAgnnnnnnNNNNNNNNNNNNNNNN 2062 |||| |||| ||| || || || ||| | ||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTT--AAATGTACTGGATACAAAAGGAGAAA 6398 Query 2063 NAAAACCTCCAAAGGAGGAGCA---AAAATCCTATCTAAATTGGCATTTAAATTATGAAA 2119 | | | || || ||||| || ||| |||| ||||| |||||||| ||||||| Sbjct 6397 CATATATTGCA--GGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 2120 TTGTAAAACAAAATCTTT-GGGCGCTAATTCTTTGATTACAT-TAAGAGCCTCTGACTTA 2177 ||||| | ||||||| ||||| | ||| | |||| | |||| || ||| ||| Sbjct 6339 ACGTAAATAATAATCTTTTGGGCGTTT-TTCCCTAATTATCTCTAAG-GCTGCTGTTTTA 6282 Query 2178 CTTCCTGCGTTAAGCGCTTGGGCGTAAGCGTCGTTGGCTGATTGTTGTCCTCCTCTTG-- 2235 || | || || |||| |||||| | || || || |||||||| || ||||||| Sbjct 6281 GACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTA 6222 Query 2236 ----CAGATCTACCGTCGATCTGAAACTCTCCCCATTCGAAGGTGTCTCCGTCCTTGTCC 2291 ||||||| || || ||||| || |||||||| || | || ||||||| ||| || Sbjct 6221 GTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCG 6162 Query 2292 AAATAGGACTTGACGTCCGAGCTCGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCT 2351 | ||| ||||| |||| ||||| |||||| ||||||| ||||||||||||||||||| | Sbjct 6161 ATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTT 6102 Query 2352 GACCTTGTTGGGGATACCAAATCGAAGAATCGTTGATTCGTGCATCTGAATTTCCCCTCG 2411 ||||| ||||| || || | ||||||||||| | |||||||||| || | ||||| ||| Sbjct 6101 GACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCG 6042 Query 2412 AATTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGTAGTTCTCTACAGACTTTG 2471 ||||||||||||||||||||| |||| || | ||| || |||||| || | ||| Sbjct 6041 AATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTG 5982 Query 2472 ATGAACTTCTTGTTAGTTGCGGTGTCTAGGGCTTTTATTTGGTCA-AGGGTTTCCTCTTT 2530 ||| | |||||||| || ||| | || || ||| | | | | || | ||||||||| Sbjct 5981 ATGTATTTCTTGTTTACTGGGGTATTTA-GGTTTTGAATAATTGAGAGAGCTTCCTCTTT 5923 Query 2531 TGTAAGCGAACAGTGTGGATAAGTTAGGAAATAATTTTT 2569 |||||| || ||||| ||||| ||||| ||| |||||| Sbjct 5922 TGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8638828408500