Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031754.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq9745 457 2e-125 >seq9745 Length=7305 Score = 457 bits (506), Expect = 2e-125 Identities = 703/999 (70%), Gaps = 20/999 (2%) Strand=Plus/Minus Query 1568 AACGGTTCGGTGAGAAAGACGAATGCTGCATTTTTTAAAGCCCACGCTTTCAAAGCTGAG 1627 || || | |||||| || |||| |||||||| | | |||||| | || | ||||| | Sbjct 6875 AATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCG 6816 Query 1628 TTCTTTTCCTCGTCCAAGAATTCTTTATAGCTTGCGTTGGGCCCTGGATTGCAGAGGAAG 1687 ||||| || ||||| | || |||||||| |||| |||||| ||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1688 ATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAG 1747 ||||| || || |||||||||| || || ||||| ||||| || | || | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1748 TCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTGAGGAAGTGCGGATCGACGTCATCA 1807 || |||| ||||||||||||||| ||||| || || | | ||||||| |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1808 ATGACGTTATACCATGCGTCGTTACTGTATACTTTTGGGCTTAGATCTAAATGCCCACAT 1867 |||||||| ||||| || || || |||| ||||||||||| ||| |||| || ||| Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1868 AAATAGTTATGTGGACCTATAGACCTAGCCCACATTGTTTTCCCGGTACGACTATCTCCC 1927 || || || ||||| |||| || |||||||| ||||||||||| || | | || || Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1928 TCAATTACTATACTTTGAGGTCTCAGTGGCCGCGCAGCGGCGTCGACAACGTTCTCGCAC 1987 || | |||||||| ||||| | |||| | ||| ||| |||||||| || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 1988 GCCCACTCTTCAAGTTCTTCTGGAACTTGATCAAATGAAGANNNNNNNNNNNNNGAAACA 2047 |||| |||| ||| || || || | | ||||| | |||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2048 TAAGGAGCTGGAGGCTCTTGAAAATATC-TATCTAAATTAGAATTTAAATTATGAAATTG 2106 || || || || | || |||||| |||| ||||||| |||||| ||||||| | Sbjct 6395 TATATTGCAGGTGGAGCCTG-GAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2107 -AAGTAGAAAGTCTCTTGGGGCTTTCTCCTTCCGTATATTGAGGGCCTGAGCTTTGGACC 2165 || || | | ||| ||||| ||| ||| | ||| | | ||| | ||| |||| Sbjct 6336 TAAATA-ATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACC 6278 Query 2166 CTGCGTTGATTGCCTCGGCATATGCGTCGTTGGCAGTTTGGCAACCTCCTC------TAG 2219 | | || | || || || || | || || || | ||| ||| |||| | | Sbjct 6277 CAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTG 6218 Query 2220 CTGATCTTCCATCGACTTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGT 2279 | ||||||||||| | ||||| |||| ||||| | ||||||| ||||| || | Sbjct 6217 CAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATAT 6158 Query 2280 AGGTTTTGACATCGCTTGAGCT---TTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTG 2336 | | || || | | ||||| |||| ||||||| ||||| ||||||||||||| || Sbjct 6157 ACGACTTCACGTAG---GAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTG 6101 Query 2337 ACCTAGTTGGGGAGGTGAGGTCGAAGAATCTATTGTTCCTGCACTGGAACTTTCCTTCGA 2396 |||| ||||| ||| || ||||||||||| || ||| |||| | |||| ||||||| Sbjct 6100 ACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGA 6041 Query 2397 ACTGGATGAGAACATGCAAGTGAGGATTCCCATCTTCATGAAGTTCTCTGCAGATTCTAA 2456 | ||||| || || || | |||| | || | ||||||| ||||||||| || | | Sbjct 6040 ATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGA 5981 Query 2457 TGAATTTTTTGTTTACTGGGGTTTGGAGATTT--AAGAATTGGGAAAGTGCTTCTCCTTT 2514 || |||| |||||||||||||| | || ||| || |||| || || ||||| |||| Sbjct 5980 TGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTT 5923 Query 2515 AGTCAGGGAGCACTTGGGGTAAGTGAGAAAATAATTTTT 2553 || || ||||| | ||| || || |||||| |||||| Sbjct 5922 TGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8572253951040