Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031760.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq9745 464 1e-127 >seq9745 Length=7305 Score = 464 bits (514), Expect = 1e-127 Identities = 670/944 (71%), Gaps = 14/944 (1%) Strand=Plus/Minus Query 1643 TTCTTCTCTTCATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAG 1702 ||||| ||||| || | |||||||||||| ||||| ||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1703 ATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAG 1762 || ||||| || |||||||||| || || ||||| |||||| || |||| | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1763 TCCTTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTAATGCGGGGTCGA-GTCATC 1821 || ||| |||||||||||| || ||||| || |||| ||| |||| || | || ||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGA-TCAACGTTATC 6637 Query 1822 AATGACGTTAAACCAGGCGTCGTTACTGTATACCCTTGGGCTCAGATCTAGATGTCCACA 1881 ||||||||| ||||||| || || |||| ||||||| | ||| ||| || || Sbjct 6636 AATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCA 6577 Query 1882 CAGATAATTATGTGGACCTAATGATCTGGCCCACATCGTCTTCCCCGTACGACTATCTCC 1941 | ||||| ||||| ||||||||||| ||||| || || ||||| || | | || || Sbjct 6576 TAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACC 6517 Query 1942 TTCAATCACTATACTTTGAGGTCTGTGTGGCCGCGCAGCGGCATCGACAACGTTTTCGGA 2001 ||| | |||||||| ||||| ||| |||| | ||| |||| ||||||||||| Sbjct 6516 TTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTC 6457 Query 2002 GACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAAAgnnnnnnnNNNNNNNNNNGAAAT 2061 ||||| |||| ||| || || || | | || | |||| Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAAC 6397 Query 2062 ATAGGGAGCCGGTGGCTCCTGAAAGATTCTGTCTAGATTTGCATTTAAATTATGAAATTG 2121 ||| || ||||| |||| || || | || | ||| |||||||| ||||||| | Sbjct 6396 ATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2122 TAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGA-CTCTAAGAGCCTCTGACTTACTGC 2180 || | ||||||| || | |||| |||| | ||||||| || ||| ||| | Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACC 6278 Query 2181 CTGCGTTAAGTGCTGTGGCGTAAGCGTCATTGGCTGTCTGTTGCCCTCCTC------TTG 2234 | | || || ||| |||||| | ||||| || | ||||| || |||| ||| Sbjct 6277 CAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTG 6218 Query 2235 CTGACCTTCCGTCGATCTGAAATTGCCCCCAGTCGAGAATGTCCCCGTCCTTCTCGATGT 2294 | || ||||| || ||||| |||| ||||| || | | || |||| ||||||||| | Sbjct 6217 CAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATAT 6158 Query 2295 AGGATTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACC 2354 | || || |||| ||||||||||||| ||||||||||||| ||||||||||||| ||||| Sbjct 6157 ACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACC 6098 Query 2355 TGCTTGGGGAGACCAAGTCGAAGAATCGCATATTCTGGCACTTGAATTTCCCTTCGAACT 2414 || |||| ||||| | |||||||||| ||||| ||| || | ||||||||||| | Sbjct 6097 TGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATT 6038 Query 2415 GGATGAGAACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATAT 2474 |||| || || || | |||| || | ||| ||| |||||||| || | || | Sbjct 6037 GGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGT 5978 Query 2475 AtttttttGAAGTTGGGGTTTGTA--TATTTAATAATTGGGAAAGTGCTTCCTCTTTGGT 2532 |||| || |||||| | || | || ||||||| || || ||||||||||| || Sbjct 5977 ATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGT 5920 Query 2533 GAGAGAACATTTGGGATAAGTGATGAAATAGTTTTTGGAATAAA 2576 ||||| || | |||||| || | ||| ||||| ||| ||| Sbjct 5919 AAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAA 5876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8619807134940