Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_031764.1 Length=2600 Score E Sequences producing significant alignments: (Bits) Value seq9745 293 4e-76 >seq9745 Length=7305 Score = 293 bits (324), Expect = 4e-76 Identities = 283/362 (78%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 2075 TCGTTAGTAGACTGCTGACCTCCTCTAG------CAGACCTGCCGTCGATCTGGAACTGT 2128 || |||| || || ||||| ||||| | |||| || || || |||||||| | | Sbjct 6251 TCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCT 6192 Query 2129 CCCCATTCAACTGTGTCTCCGTCCTTGTCGATGTAAGACTTGACGTCGGAGCTCGACTTA 2188 ||||| |||| ||| ||||||| ||| ||||| || ||||| |||| |||||| || ||| Sbjct 6191 CCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTA 6132 Query 2189 GCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTAGTTGGGGAGACCAGATCGAAGAAT 2248 ||||||| ||||| ||||||||||||| |||||| ||||| ||||| |||||||||||| Sbjct 6131 CCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAAT 6072 Query 2249 CTGTTATTCTGGCATTGGTATTTCCCTTCGAACTGGATGAGGACGTGGAGATGAGGCTCC 2308 ||||||||| |||| ||| ||||||||||| ||||| || ||||||||| |||| ||| Sbjct 6071 CTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCC 6012 Query 2309 CCATTTTCGTGTAATTCCCTGGAGACCTTGATGAACTTCTTATTAACTGGGGTTTTAATG 2368 | ||||| || ||| ||| | | ||||||| | ||||| || |||||||| || | | Sbjct 6011 CTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGG 5952 Query 2369 TGTTGAAT--TTGGGAAAGTACTTCTGCTTTAGTAAGAGAGCATTGTGGATAAGTGAGGA 2426 | |||||| ||| || || |||| |||| ||||||||||| || ||||| || || | Sbjct 5951 TTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAA 5894 Query 2427 AA 2428 || Sbjct 5893 AA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8134764659160