Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_032006.1 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq9745 242 6e-61 >seq9745 Length=7305 Score = 242 bits (268), Expect = 6e-61 Identities = 631/956 (66%), Gaps = 27/956 (3%) Strand=Plus/Minus Query 1530 TCTTTGTCGAGAAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACGATTGAT 1589 |||| ||| ||||| |||||||| || | |||||||||||| || | ||||| Sbjct 6809 TCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTG 6750 Query 1590 GGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAGTCCCGT 1649 || || || ||||||| || || |||||||||||| | | || | ||||| || | | Sbjct 6749 GGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTT 6690 Query 1650 TGGGCCCCAATGAGCTCTTTCCAATGCTTCATCTTTAGATATTGCGGTGTGACGTCATCA 1709 | |||||| |||| || || |||| || || ||| |||| |||| |||| Sbjct 6689 TTGGCCCCCATGAATTCCTTAAAATGTTT------TAAATAACGCGGATCAACGTTATCA 6636 Query 1710 ATGACGTTGTACTCCGCTTCGTTTGAGTAAACCCTAGAATTAAAATCAAGGTGTCCACTT 1769 |||||||||||| || || || ||| | | | | |||| || || | | Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1770 AAATAGTTATGTGGGCCTAATACACGCGCCCACATCGTCTTCCCCGTCCTTGAGTCACCC 1829 || || || |||||||||||| | ||||| || || ||||| || || | ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1830 TCGATGATTATACTAATAGGTCTCTCCGGCCGCGCAGCGGGATCCCTACCAAAATAATCA 1889 || | | |||||| ||||||| | |||| | ||| || | || ||| | || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCA---CTCACAACGTTTTCT 6459 Query 1890 TCAGCCCACTCTTGCATCTCATCCGGAACCTCTGTAAAGGA---GGAGAGGGGAAACGGA 1946 ||| |||| ||||| | ||||| || | |||| | ||| | ||| ||| Sbjct 6458 TCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC---AAAAGGA 6402 Query 1947 GGAACCCATGGTTCCGGAGCCTTCTGAAAAATACGTTCTAAATTAGAACGTATGTTGTGT 2006 | ||| || | | || | ||| || || || ||||||| | || | || Sbjct 6401 GAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGA 6342 Query 2007 TGTTG-AAGGACGAAGTCTTTCGGTTGCTCCTCCCTTAATATATTGAGGGCCTCCATGAC 2065 | || | || ||||| || | | ||||| | ||| | | ||| | | Sbjct 6341 AAACGTAAATAATAA-TCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTT 6283 Query 2066 GGATCCTGCGTTGAGGACCTTGGCATACGTGTCGTTGGCAGATTGCTGACCTCCTCGAG- 2124 || || | || ||| | | || || || || || ||||| ||||| |||| | Sbjct 6282 AGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGT 6223 Query 2125 -----CTGATCTGCCGTCGATCTGGAAAACTCCATGATCAATGAAGTCTCCGTCTTTCTC 2179 | ||||| || || |||||||| |||| |||||| ||||||| ||||| Sbjct 6222 AGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTC 6163 Query 2180 CATATAGGTTTTGACGTCAGATGAGGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGT 2239 ||||| | || |||| || ||||||| ||||||| | ||| |||||||||||||| Sbjct 6162 GATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGT 6103 Query 2240 TGATCTGGTTGGGGATACCATGTCGAAGAATCTACAGTTTGTGCATCTGTATTTTCCTTC 2299 ||| |||||||| || || | ||||||||||| || |||||| |||| || ||||| Sbjct 6102 TGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTC 6043 Query 2300 GAATTGGATGAGCACGTGGAGATGAGGTTCCCCATCTTCGTGGAGTTCTCGAGTTATTCG 2359 ||||||||| |||||||||||| ||||||||| | ||| || ||||| || Sbjct 6042 GAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTT 5983 Query 2360 GATGAACTTTATGTTGGTAGGTGTTTTTAGAGCT--AACAATTGGGAAAGTGCTTCTTCC 2417 |||| | || |||| || || ||||| | || |||| || || ||||| || Sbjct 5982 GATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCT 5925 Query 2418 TTGGATAAAGAGCAATGTGGATATGTTATAAAATAATTCTTAGAATTAATAAGAAA 2473 || | | |||||| || |||||||||| |||| ||| |||||| ||| |||| Sbjct 5924 TTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAA 5869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8236211451480