Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_032118.1 Length=2791 Score E Sequences producing significant alignments: (Bits) Value seq9745 488 1e-134 >seq9745 Length=7305 Score = 488 bits (540), Expect = 1e-134 Identities = 715/996 (72%), Gaps = 24/996 (2%) Strand=Plus/Minus Query 1647 GAAGAGTGGTTCGGTGATGGTGTG-GAACAACGCATTTTTTATAGCCCAGTATTTTAGTG 1705 ||| | ||| | ||||| || || ||| | |||||| | | ||||||| | || | | Sbjct 6879 GAATAATGGCTGGGTGA-GGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAG 6821 Query 1706 CGTTGtttttttCCTCGTCAAGGAACTCTTTATAGGACGACGTTGGGCCC-GGATTGCAC 1764 | ||| || || |||||||| ||||||||||| || |||||| || |||||||| Sbjct 6820 CTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAA 6762 Query 1765 AGGAAGATTGTTGGGATCCCGCCTTTAATTTGAATTGGTTTCCCGTA-CTTCGTGTTGCT 1823 ||||||||||| || ||||||||||||| || || || || ||||| |||| | || Sbjct 6761 AGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC-TATTATA 6703 Query 1824 TTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTGAAATGTTTCAAATAATGAGGGTCAAC 1883 ||||| || | || |||||||||||||||||| |||||||| |||||| | || ||||| Sbjct 6702 CTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAAC 6643 Query 1884 ATCGTCAATGATATTAAACCAGGCATCATTTGAATATATTTTAGGGCTTAGATCCAGATG 1943 | ||||||| || ||||||||||||| || |||| ||||||| ||| ||| Sbjct 6642 GTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATG 6583 Query 1944 TCCACATAAATAGTTATGAGGACCTAAGGAACGTGCCCATAATGTTTTTCCAGTACGTGA 2003 || ||||| || || || || ||||| || | ||||||| |||||| ||||| | | Sbjct 6582 ACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGC 6523 Query 2004 ATCACCTTCTAATACTAAACTTAAGGGCCTTATTGGCCGCGCAGCGGCA-GCACATACGT 2062 |||||||||| |||| ||| | || | |||| | ||| |||| |||| |||| Sbjct 6522 CTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACA-ACGT 6464 Query 2063 TTTCAGAAGCCCATTCTTCCAGTGTATCTGGAACGTTATTAAACGAAGAAGATAAAAACG 2122 |||| | |||| |||| || | || || ||||| ||||| | | |||| ||| | Sbjct 6463 TTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAG 6404 Query 2123 GACTA--ATATATTGCTCCATAGGAGGAGC---GAAAATCCTATCTAAATTAGCATTTAA 2177 || | ||||||||| ||| ||||| ||| ||| |||| |||||||||||||| Sbjct 6403 GAGAAACATATATTGC-----AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAA 6349 Query 2178 ATTATGAAATTGTAAAACAAAATCTTTAGGAGCCTTCTCCTTTAATATATCGAGGGCCTG 2237 ||||||| ||||| | ||||||| || || ||| | | ||| || | ||| Sbjct 6348 TCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGC 6289 Query 2238 TGACTTAGACCCTGAATTGAGTGCCTCGGCATATGCGTCGTTGGC--ATT-CTGGCAACC 2294 || |||||||| ||||| || || || || || | || || || ||| || | || Sbjct 6288 TGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCC 6229 Query 2295 TCCTCTA---GCAGATCGTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTC 2351 || | || ||||||| |||||| |||||||| |||| ||||| ||||||| Sbjct 6228 TCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTG 6169 Query 2352 TTTTTCCATGTAGGATTTAACATCGGAGCTAGACTTAGCTCCCTGGATGTTAGGATGGAA 2411 || || || || || || || | |||||| || ||| ||||||| ||||| |||||||| Sbjct 6168 CTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAA 6109 Query 2412 TTGGGTTGAGCGATTAGGTGAGTTGAGGTCGAAGAAACGGTTGTTTCTGCACTTGAATTT 2471 || ||||| | | || ||| || |||||||| | ||| || |||| || | || Sbjct 6108 ATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTT 6049 Query 2472 TCCTTCGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTTTCATGTAATTCTCTGCA 2531 |||||||||||||| |||||||| ||| ||||||||| |||||||| ||||||||| Sbjct 6048 CCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCA 5989 Query 2532 AATTCTGATGAATAATTTATTTGTTGGGGTATCTAGGGCTAGCAATTGTGAAAGTGCCTC 2591 ||| ||||| || || ||| |||||||| |||| | | | ||| || || || Sbjct 5988 AATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTC 5929 Query 2592 TTCTTTGGTAAGTGAGCAGCGTGGATAAGTAAGGAA 2627 ||||| ||||| |||||| | ||||| || || || Sbjct 5928 CTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8734690429400