Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_033334.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq9745 428 8e-117 >seq9745 Length=7305 Score = 428 bits (474), Expect = 8e-117 Identities = 635/896 (71%), Gaps = 12/896 (1%) Strand=Plus/Minus Query 1704 TCCTGGATTGCAGAGAAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1763 |||||||||||| || ||||| ||||| || || ||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1764 TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATAAATTCTTTAAAGTGCTTTAGGTA 1823 | | | || ||||| || | | ||||||||| ||||| ||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1824 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACTTTTGGACT 1883 | || | |||| |||||||||||| ||||| ||| ||| | ||| |||||| || Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1884 CAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAATGACCGAGCCCATACTGTTTT 1943 | || || || || || ||||| || || |||||||| | |||||||| |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1944 TCCTATTCTACTTGGGCCTTCTATAACTATACTTATGGGCCTATCCGGCCGCGCAGCGGA 2003 || ||||| ||||||| ||||||||| || || | | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 2004 ATCCATGACATTTTCAGCGGCCCAATCGCTGATAATGTCAGGTACATTATTgaaggaaga 2063 | || || ||||| | |||| || | ||| || ||||| || || || | | Sbjct 6474 ACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACT 6415 Query 2064 aagaga-aaaaggagaagaatacacagaaggaggaggagagaaaaTCCTATCTAAATTCG 2122 || | |||||||||| ||| | | ||| |||| ||| ||| |||| ||||| | Sbjct 6414 G-GATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 2123 AACATAAATTATGATATTGAAAA--ATAAATTTTTCAGGGAGTTTCTCCCTGATTATTTG 2180 | ||| ||||| | | ||| |||| |||| ||| |||| ||||| ||||| | Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTTT--GGGCGTTTTTCCCTAATTATCTC 6298 Query 2181 TAAGGCAGCTTCTTTGCTGCCGGAATTAAGTGCCTCTGCTGCTGCGTCATTAGCCGTTTG 2240 |||||| ||| ||| || ||||| || || ||||| | |||||||||| ||| Sbjct 6297 TAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTG 6238 Query 2241 CTGGCCTCCTCTAG------CAGATCTTCCGTCGATTTGAAATTCGCCCCAAGTGAGGGT 2294 || || ||||| | |||||||||| || || || ||||| |||||| | || Sbjct 6237 TTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGT 6178 Query 2295 ATCTCCATCCTTATCGACGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGTATGTT 2354 |||||| | ||| |||| || ||||| || | ||||||||||||| ||||||||||||| Sbjct 6177 ATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTT 6118 Query 2355 TGGATGGAAATGTGCTGACCTGGTTGGAGAGACCAGGTCGAATAGGCGTTGGTTCGTGCA 2414 |||||||||||||| |||||||||||||||||| || ||||| | | | |||||||| Sbjct 6117 TGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCA 6058 Query 2415 GACGAACTTGCCTTCGAACTGGAGAAGCACGTGGATATGAGGCTGCCCATCTTCGTGCAG 2474 | |||| |||||||| |||| ||||||||||| | |||| | || | ||| || Sbjct 6057 TGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGC 5998 Query 2475 TTCTCTAGCTATGTGAATATATTTTTTATTCACAGGTGTTTGAAATTTTTGGAGTTGGGC 2534 |||||| || | || ||||| || || || || || | | ||||| | | Sbjct 5997 TTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGA 5938 Query 2535 GAGAACTTCTTCTTTAGAGAGAGAGCAATGCGGATAAGTAAGGAAGTAATTTTTAG 2590 |||| |||| ||||| | |||||||| || ||||| || || || |||||||| Sbjct 5937 GAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8708573078220