Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_033554.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq9745 535 7e-149 >seq9745 Length=7305 Score = 535 bits (592), Expect = 7e-149 Identities = 709/982 (72%), Gaps = 8/982 (1%) Strand=Plus/Minus Query 1591 GAAGATCGCATTCTTGAGAGCCCAATTCTTTAATGCGCTGTTCTTTTCCTCGTCGAGGAA 1650 ||||| ||||| |||||||||| ||| | || |||||| || ||||| || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1651 TTCTTTATAACTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTT 1710 ||||||||||| |||||| || |||||||| ||||||||||| || ||||||||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1711 AATTTGAACTGGTTTCCCGTATTTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAA 1770 || || || || || |||||| | | || | ||||| || |||| |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1771 CTCCTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTC 1830 |||||||| ||||| | || |||| || |||| ||||||||||||||||||||| || Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1831 GTTACTGTAGACCTTGGGACTTAAGTCTAAGTGTCCACATAGATAGTTATGTGGGCCTAG 1890 || |||| || || |||| || | || || |||| || || |||||||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1891 TGACCTAGCCCACATTGTCTTGCCGGTTCGACTGTCTCCCTCAATTACTATACTTTGAGG 1950 ||| |||||||| ||||| || || |||| | || || || | |||||||| ||| Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1951 TCTCAGGGGCCGCGCAGCGGCGTCGACGACGTTCTCCGACACCCACTCTTCAAGTTCTTC 2010 || | |||| | ||| ||| || ||||| || ||||| |||| ||| || Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTC 6436 Query 2011 TGGAACTTGATCGAAAGAAGAAGAGGAAAAGGGAGAAACGTAGGGAGCCGGTGGCTCCTG 2070 || || | | || | | || ||| |||||||| || || ||||| |||| Sbjct 6435 CGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTG 6376 Query 2071 AAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAGC 2130 || ||| | || | ||| |||||||| ||||||| ||| | ||||||| || Sbjct 6375 GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCG 6316 Query 2131 TAGTTCCCTAATGA-CTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCCGCGGCGT 2189 | ||||||||| | ||||||| || ||| ||| || | || || || | |||| Sbjct 6315 TTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2190 AAGCGTCGTTTGCTGTCTGTTGTCCTCCTCTTG------CAGATCGTCCGTCGATCTGAA 2243 || | || || || | ||||| || ||||||| |||||| ||| || ||||| | Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2244 ACTCCCCCCATTCGAGAGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGG 2303 | || ||||| || | || ||||||| ||| ||||| || ||||| |||| |||||||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGG 6137 Query 2304 ATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTATTTGGGGATACCAGGTCGA 2363 ||||| ||||||||||||||||||||||||||| |||||| |||| || || || |||| Sbjct 6136 ATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGA 6077 Query 2364 AGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATGAGCACGTGCAGATGAG 2423 |||||| | |||| ||| |||| ||||| ||||| ||||| |||||||| ||| ||| Sbjct 6076 AGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAG 6017 Query 2424 GTTCCCCATTTTCATGGAGTTCTCGGCAGATTTTAATATATTTTTGGGAAGTTGGGGTTT 2483 |||||| |||||||| ||||| ||| || || || ||||| | | |||||| | Sbjct 6016 GTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTAT 5957 Query 2484 GAAGATTCTGGATTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAACACTTGGGATAAGTGA 2543 || || || || || || ||||| ||||| || ||||| || | |||||| || | Sbjct 5956 TTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTA 5897 Query 2544 GGAAATAGTTTTTAGAATAAAT 2565 | ||| ||||||||| |||| Sbjct 5896 GAAAAATATTTTTAGAAGAAAT 5875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8572253951040