Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_033779.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq9745 423 3e-115 >seq9745 Length=7305 Score = 423 bits (468), Expect = 3e-115 Identities = 690/996 (69%), Gaps = 16/996 (2%) Strand=Plus/Minus Query 1613 CGAAGATCGCATTTTTAATAGCCCAGGCTCTTAGT-GCTGCGtttttttCCTCGTCGAGA 1671 |||||| |||||| | | |||||||| |||| | |||||||| || || ||||| ||| Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGA-CTTAATAGCTGCGTTCTTATCTTCGTCAAGA 6798 Query 1672 TATTCTTTATATGAGGATGTTGGCCCTGGATTGCATAGAAAGATTGTGGGAATCCCGCCT 1731 | |||||||| || | || ||||||||||| || ||||||||||| ||||||||| Sbjct 6797 AACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCT 6738 Query 1732 TTAATTTGGATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCACCCATA 1791 |||| || | || || ||||| || | || ||||| || | || ||| ||||| Sbjct 6737 TTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATG 6678 Query 1792 AATTCCTTGAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACGCA 1851 |||||||| || || |||| ||| |||| || |||| |||||||||||||||||| ||| Sbjct 6677 AATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCA 6618 Query 1852 TCGTTGCTGTAGACCTTTGGGCTTAGGTCAAGGTGTCCACATAAGTAGTTATGTGGGCCT 1911 || ||| |||| |||||||||| ||| || || |||||||| || ||||||||| Sbjct 6617 TCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCT 6558 Query 1912 AGAGAACGGGCCCATATGGTCTTCCCGGTCCGGCTTTCTCCCTCAATGACAATACTGTTG 1971 | || | |||||||| || ||||| || | || || || | || ||||| | Sbjct 6557 AATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATA 6498 Query 1972 GGCCTCCAGGGCCGCGCAGCGGAAGGCATGACGTTCTCAGAAACCCATGTCTC-AAGTTC 2030 || | |||| | ||| || | || ||||| || |||||| |||| ||| Sbjct 6497 GGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCA-GTCTTGAAGAAT 6439 Query 2031 CTCCGGAACTTGATCGAAAGANNNNNNNNNNNNNNNNNAAATATAAGGAGCCGGAGGCTC 2090 |||||| || | | || | ||| ||| || || || | Sbjct 6438 CTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGC 6379 Query 2091 TTCAAAAATCCTATCTANNNNNNNNNNNNnnnnnngAAATTGTAAAATAAAATCTTTAGG 2150 | || ||| |||| | |||| ||||| | ||||||| || Sbjct 6378 CTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2151 GGCTAATTCCCTTATTACAT-TAAGAGCCGCCGGCTTACTTCCTGCGTTAAGTGCTTTTG 2209 | | |||||| |||| | |||| || || | ||| || | || || |||| || Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTG 6260 Query 2210 CGTAAGCGTCGTTGGCTGATTGCTGCCCGCCCCTTG------CAGATCGTCCGTCGATCT 2263 ||||| | || || || ||||| || || || |||| |||||| ||| || |||| Sbjct 6259 CGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCT 6200 Query 2264 GGAATTCTCCCCATTCGAGTGTATCGCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGC 2323 ||||||||||||| || | |||||| |||| ||| ||||| || ||||| |||| ||||| Sbjct 6199 GGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2324 TGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGGT 2383 |||||||| ||||||| ||||| ||||||||||||| |||||||||||| || || || | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2384 CGAAGAATCTCTGATTTTGGCAGTTGAATTTTCCTTCGAACTGCAGAAGCACATGTAAAT 2443 |||||||||| | ||| ||| || | || |||||||| || | |||||| || | | Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2444 GAGGTTCGCCATCTTCGTGCAACTCTCTGCAGATTTTAATGTATTTTTTATTTGTTGGGG 2503 ||||||| | | ||| || |||||||| || || |||||||| || ||| ||||| Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2504 --TTTGGAGTTTAAGTAGTTGTTCGAGGGCTTCGTCTTTGGTTAGAGAACATTTTGGGAA 2561 ||| | ||| | || ||| ||| ||||| ||||| || ||||| || | || | Sbjct 5959 TATTTAGGTTTTGAATAATTG--AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2562 AGTAAGGAAATAATTTTTGGAATTAACTCTAAAACG 2597 || || ||| |||||| ||| || | |||||| Sbjct 5901 TGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8718083715000