Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotus_20japonicus_20[genbank_20GCA_5F000181115.2_202015-09-04] 44,464 sequences; 394,454,697 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq30665 506 8e-140 seq30666 392 1e-105 >seq30665 Length=3289 Score = 506 bits (560), Expect = 8e-140 Identities = 837/1205 (69%), Gaps = 20/1205 (2%) Strand=Plus/Plus Query 3158 TTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGC 3217 ||||| ||||| |||||||||||||| ||||| ||| | || || ||||| ||| | | Sbjct 7 TTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCC 66 Query 3218 GTCTTTCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCT 3277 ||||||| || |||||||||| | |||||||| |||| || || |||| || || | Sbjct 67 GTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTT 126 Query 3278 ACATTCCGCATCGTCATGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGGTGTTA 3337 | | || |||||||| |||||||| || ||||||||| |||| ||| |||||||||| Sbjct 127 ATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTA 186 Query 3338 ATGCTCAGCCTCTGCCTTCTGTTACTTGCAATCGCTATCCGGACCATGCTGGTTATGTAG 3397 |||| ||||| || |||||| | | | ||| |||||||| | || | | | Sbjct 187 ATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTG 246 Query 3398 GTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTTTTGCATCAGAGCTATCTGA 3454 | || ||| |||| | ||||| || |||||| |||| |||| | ||| ||| Sbjct 247 GCACGATTAACCCTGATACCAATAA---AATCCCTAAGCATTTGTTTCAGGGTTATTTGA 303 Query 3455 ACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAGCGTACCGAGGCCAACCCGT 3514 | || || || |||||||| || |||||||||||||| ||||||||||| ||||| Sbjct 304 ATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTA 363 Query 3515 CTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAATATTT 3574 | | |||||| | ||||||||||||||| | |||||||||||||| || ||||| |||| Sbjct 364 ATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTT 423 Query 3575 GGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAAATGGGTATTGAAAGCAATT 3634 || |||||||||| ||||| || || | | || ||||| | | | || | Sbjct 424 GGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACAT 483 Query 3635 CCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTA 3694 | ||||| ||||||||| ||||||| |||||||| | | || ||||| || || ||| Sbjct 484 CTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTG 543 Query 3695 CTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATG 3754 |||||| ||||||||||||| ||||||||| || ||||| ||| |||||| |||| Sbjct 544 ATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATG 603 Query 3755 ATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTCTGGGCTTCCGGTTACGACG 3814 | || || ||||| || || ||||| |||| | | | ||||||| || || || || | Sbjct 604 ACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATG 663 Query 3815 TTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGTCGAGTCCAGCAGACGTTTA 3874 |||| || || |||||| | || | || || || |||||||| || || ||||| | || Sbjct 664 TTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATA 723 Query 3875 AACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGGCTCTGA 3934 |||| || |||||||| ||||| || ||||||||||| ||| | ||| | || || Sbjct 724 AACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTG 783 Query 3935 TTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTTGCTGGTAAGTCTCAGTTAA 3994 |||| || ||||||| | ||| || || ||| | ||| | || | Sbjct 784 TTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGA 843 Query 3995 CCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAACTTGCCTCCTCGCGAGATTA 4054 | |||||||| ||||||||||||| | | || ||| |||||||| || || || ||| Sbjct 844 CTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATT- 902 Query 4055 GTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAAGATTAAAGTTGCCGAGTCT 4113 ||| | ||| | |||||| ||| ||| || ||| |||| |||| ||| | Sbjct 903 TCTATGAAGGATGTTTTCCGTTCTGGCGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGT 962 Query 4114 ATTTGGTATCGTACTCATCCTGATTACGTTAACTTTAAGTATCATGATTTGCATGGATTC 4173 ||||| ||| | || || ||| | ||||| | | | || ||| Sbjct 963 CAGTGGTACCGTTATGCGCCCTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTC 1022 Query 4174 CCGTTCCTTGATGATGCGCCTGGTACATCTACTGGTGATAATCTTCAGGAAGCTATCCTT 4233 || ||| || | || ||| || |||||| || | || ||| | ||| Sbjct 1023 CCATTCATTCAGGAACCGC---------CTTCTGGTG---ATTTGCAAGAACGCGTACTT 1070 Query 4234 GTTCGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGCAGTTGCTACAGTGGAACAAA 4293 |||| || || || ||||| || |||||||| |||||| | |||||||| | Sbjct 1071 ATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGT 1130 Query 4294 CAGGCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTACTGTACGTGATTCCATTATG 4353 |||| | | ||| || | ||||||||| || |||| || || ||||| || ||| Sbjct 1131 CAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATG 1190 Query 4354 ACCTC 4358 || || Sbjct 1191 ACTTC 1195 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 2369 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 2428 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 2429 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 2483 >seq30666 Length=2127 Score = 392 bits (434), Expect = 1e-105 Identities = 489/669 (73%), Gaps = 51/669 (8%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 1464 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 1523 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 1524 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 1583 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1584 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 1643 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 1644 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 1703 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 1704 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 1763 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 1764 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 1823 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGA--TATGAAG--AAAGCACGT---- 2971 | ||||| |||||||| ||| | ||| ||| || | | | ||| ||| |||| Sbjct 1824 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTG 1883 Query 2972 -CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTGCTC 2999 || || ||| ||||| |||||||| |||| Sbjct 1884 GCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTC 1943 Query 3000 GCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAG 3057 | || ||||||||||| ||| || |||||||| || |||||| |||| || || Sbjct 1944 GTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAG 2003 Query 3058 G--AAATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTC 3115 | ||||| ||||||||| | |||||| ||| || ||| |||||| || | Sbjct 2004 GATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC 2060 Query 3116 ATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGT 3173 |||||| ||| | ||| | || | |||||||||| | || ||||| ||||| || Sbjct 2061 ATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 2118 Query 3174 TATCGCTGG 3182 ||||||||| Sbjct 2119 TATCGCTGG 2127 Score = 168 bits (186), Expect = 3e-38 Identities = 279/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| | || ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 188 GGTTGGTTTATAGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 247 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 248 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 307 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 308 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 367 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 368 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 425 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 426 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 484 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 485 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 544 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 545 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19353514140096